RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ZNF680Q8NEM1 530 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 MRAPQ8TCY5 172 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 RPUSD4Q96CM3 377 aaKnown RBP6.86□□□□□ -1.31
LDLR-210ENST00000559340 TXNDC17Q9BRA2 123 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 Q9H3A6 140 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 SAV1Q9H4B6 383 aaPredicted RBP6.86□□□□□ -1.31
LDLR-210ENST00000559340 MANBALQ9NQG1 85 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 C19orf73Q9NVV2 129 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 PPP1R14DQ9NXH3 145 aa6.86□□□□□ -1.31
LDLR-210ENST00000559340 SERTM2A0A1B0GWG4 89 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 K7EIL1 84 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 SLC17A3O00476 420 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 UBE2CO00762 179 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 EIF3GO75821 320 aaKnown RBP eCLIP6.85□□□□□ -1.31
LDLR-210ENST00000559340 SLC25A5P05141 298 aaKnown RBP6.85□□□□□ -1.31
LDLR-210ENST00000559340 IGHV4-30-4P0DP06 118 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 HLA-DRB4P13762 266 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 APOC4P55056 127 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 PMS2P11Q13670 270 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 ACTL10Q5JWF8 245 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 IGFL4Q6B9Z1 124 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 MORN3Q6PF18 240 aaPredicted RBP6.85□□□□□ -1.31
LDLR-210ENST00000559340 SSX7Q7RTT5 188 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 APRG1Q8IVJ8 170 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 RNF182Q8N6D2 247 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 C5orf17Q8NAS9 161 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 OR8A1Q8NGG7 326 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 C20orf173Q96LM9 149 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 CLUHP3Q96NS8 147 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 TCEAL7Q9BRU2 100 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 HLA-DRB4X5D2U9 266 aa6.85□□□□□ -1.31
LDLR-210ENST00000559340 KIR2DL5BA0A0G2JN68 375 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 KIR2DL5BA0A0G2JPC4 375 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 A0A0J9YX75 114 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 RBAKDNA6NC62 111 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 FBLL1A6NHQ2 334 aaKnown RBP6.84□□□□□ -1.31
LDLR-210ENST00000559340 KNCNA6PVL3 124 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 H3BMM0 161 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 AMBPP02760 352 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 SUMO1P63165 101 aaKnown RBP6.84□□□□□ -1.31
LDLR-210ENST00000559340 CST9LP1Q5W188 147 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 ZNF767PQ75MW2 155 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 KIR2DL5AQ8N109 375 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 EXOC3-AS1Q8N2X6 119 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 OR4B1Q8NGF8 309 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 KIR2DL5BQ8NHK3 375 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 LINC00477Q96M19 166 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 C1QTNF4Q9BXJ3 329 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 TMPRSS5Q9H3S3 457 aa6.84□□□□□ -1.31
LDLR-210ENST00000559340 TGP01266 2768 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 A0A1B0GV50 99 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 FAM74A7A6NL05 159 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 PRB2P02812 416 aaPredicted RBP6.83□□□□□ -1.32
LDLR-210ENST00000559340 HLA-DMBP28068 263 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 TSPOP30536 169 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 UBE2G2P60604 165 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 HIST1H1AQ02539 215 aaPredicted RBP6.83□□□□□ -1.32
LDLR-210ENST00000559340 TMEM78Q5T7P6 136 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 HIST1H2BAQ96A08 127 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 CSTL1Q9H114 145 aa6.83□□□□□ -1.32
LDLR-210ENST00000559340 ZNF705FA8MVS1 300 aaPredicted RBP6.82□□□□□ -1.32
LDLR-210ENST00000559340 DIRC3C9JPN6 131 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 M0R3E3 92 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 PAGE4O60829 102 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 S100A9P06702 114 aaKnown RBP6.82□□□□□ -1.32
LDLR-210ENST00000559340 RPL35AP18077 110 aaKnown RBP6.82□□□□□ -1.32
LDLR-210ENST00000559340 CNN1P51911 297 aaKnown RBP6.82□□□□□ -1.32
LDLR-210ENST00000559340 C9orf47Q6ZRZ4 202 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 TRPT1Q86TN4 253 aaKnown RBP6.82□□□□□ -1.32
LDLR-210ENST00000559340 ODF3Q96PU9 254 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 WFDC10AQ9H1F0 79 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 GNG13Q9P2W3 67 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 EPDR1Q9UM22 224 aa6.82□□□□□ -1.32
LDLR-210ENST00000559340 TRBV7-9A0A0J9YWB2 115 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 RBMY1BA6NDE4 496 aaKnown RBP6.81□□□□□ -1.32
LDLR-210ENST00000559340 RBMY1EA6NEQ0 496 aaKnown RBP6.81□□□□□ -1.32
LDLR-210ENST00000559340 A8MTW9 85 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 C11orf94C9JXX5 98 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 F6UB75 175 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 RBMY1DP0C7P1 496 aaKnown RBP6.81□□□□□ -1.32
LDLR-210ENST00000559340 FRMD6-AS1P0C7T7 363 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 LEPP41159 167 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 ZNF124Q15973 351 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 LINC00322Q6ZN03 302 aaPredicted RBP6.81□□□□□ -1.32
LDLR-210ENST00000559340 CYB561D1Q8N8Q1 229 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 LYPD6BQ8NI32 183 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 CITED4Q96RK1 184 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 ATG101Q9BSB4 218 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 NDFIP1Q9BT67 221 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 VAX2Q9UIW0 290 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 RPH3ALQ9UNE2 315 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 YTHDF2Q9Y5A9 579 aaKnown RBP6.81□□□□□ -1.32
LDLR-210ENST00000559340 LENEPQ9Y5L5 61 aa6.81□□□□□ -1.32
LDLR-210ENST00000559340 GGTLC3B5MD39 225 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 NPIPB6E9PJ23 425 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 PDE6DO43924 150 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 NDUFS6O75380 124 aaKnown RBP6.8□□□□□ -1.32
LDLR-210ENST00000559340 IGKV3-20P01619 116 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 TCRAP04437 139 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 NMBP08949 121 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms