RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SSBP2P81877 361 aaPredicted RBP8.64□□□□□ -1.03
USP3-206ENST00000558157 ATP5G2Q06055 141 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 GAGE5Q13069 117 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 GAGE6Q13070 117 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 ORMDL3Q8N138 153 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 CDIP1Q9H305 208 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 NGBQ9NPG2 151 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 CRYGCP07315 174 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 ARMS2P0C7Q2 107 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 EVI2AP22794 236 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 SUB1P53999 127 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP3-206ENST00000558157 NUP37Q8NFH4 326 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 PSG8Q9UQ74 426 aa8.64□□□□□ -1.03
USP3-206ENST00000558157 TRBV25-1A0A075B6N4 114 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 K7ERJ3 54 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 HOXB4P17483 251 aaPredicted RBP8.63□□□□□ -1.03
USP3-206ENST00000558157 METRNQ9UJH8 293 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.63□□□□□ -1.03
USP3-206ENST00000558157 LINC01619G3V211 115 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 NDUFS7O75251 213 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 SAA2P0DJI9 122 aaPredicted RBP8.63□□□□□ -1.03
USP3-206ENST00000558157 PRDX2P32119 198 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 EDDM3AQ14507 147 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 RRN3P1Q2M238 152 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 TM4SF20Q53R12 229 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 ZCCHC24Q8N2G6 241 aaKnown RBP8.63□□□□□ -1.03
USP3-206ENST00000558157 PRELID3AQ96N28 172 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 DCTN5Q9BTE1 182 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 OTORQ9NRC9 128 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 SPANXA1Q9NS26 97 aa8.63□□□□□ -1.03
USP3-206ENST00000558157 IGLV3-9A0A075B6K5 115 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 IGHV3-64DA0A0J9YX35 117 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 A0A1B0GWB2 263 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 NPIPB5A8MRT5 1133 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 IGHV3-13P01766 116 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 MZT1Q08AG7 82 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 MLANAQ16655 118 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 C12orf74Q32Q52 190 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 ZNF826PQ6ZT77 177 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 Q6ZUT4 128 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 SYT8Q8NBV8 401 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 Q9H3A6 140 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 NDUFA4L2Q9NRX3 87 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 HHLA3Q9XRX5 114 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 LINC01546A6NGU7 62 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 FAM106CPP0CH98 169 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 MYOD1P15172 320 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 LOXL1Q08397 574 aaPredicted RBP8.62□□□□□ -1.03
USP3-206ENST00000558157 TMEM30BQ3MIR4 351 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 FAM106AQ4KMX7 169 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 KLF17Q5JT82 389 aaPredicted RBP8.62□□□□□ -1.03
USP3-206ENST00000558157 FAM104BQ5XKR9 115 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 CD177Q8N6Q3 437 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 SGK494Q96LW2 274 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 C20orf78Q9BR46 151 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 CALYQ9NYX4 217 aa8.62□□□□□ -1.03
USP3-206ENST00000558157 ANKHD1Q8IWZ3 2542 aaKnown RBP8.62□□□□□ -1.03
USP3-206ENST00000558157 PLCE1Q9P212 2302 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 IGKV1D-37A0A075B6S9 117 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 D6R8Y8 96 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 GP9P14770 177 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 ZNF562Q6V9R5 426 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 SRSF12Q8WXF0 261 aaKnown RBP8.61□□□□□ -1.03
USP3-206ENST00000558157 RNF183Q96D59 192 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 FAM110AQ9BQ89 295 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 KMT2BQ9UMN6 2715 aaPredicted RBP8.61□□□□□ -1.03
USP3-206ENST00000558157 WI2-2373I1.2A0A1W2PRP0 233 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 CD3EP07766 207 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 CGB3P0DN86 165 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 CGB7P0DN87 165 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 ADIPOQQ15848 244 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 C1orf229Q6ZS94 237 aaPredicted RBP8.61□□□□□ -1.03
USP3-206ENST00000558157 ANAPC13Q9BS18 74 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 DKK2Q9UBU2 259 aa8.61□□□□□ -1.03
USP3-206ENST00000558157 CACNA1DQ01668 2161 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 ATP5LO75964 103 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 PLAUP00749 431 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 IGKCP01834 107 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 CFHR2P36980 270 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 INSL3P51460 131 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 ODF1Q14990 250 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 OSR1Q8TAX0 266 aaPredicted RBP8.6□□□□□ -1.03
USP3-206ENST00000558157 NPIPB3Q92617 1050 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 ZNF462Q96JM2 2506 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 LOC389332A0A1B0GUA5 103 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 E7EQL1 145 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 C19orf84I3L1E1 186 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 IGLV2-11P01706 119 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 LOXP28300 417 aaPredicted RBP8.6□□□□□ -1.03
USP3-206ENST00000558157 CIARTQ8N365 385 aaPredicted RBP8.6□□□□□ -1.03
USP3-206ENST00000558157 TMEM75Q8N9X5 138 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 OR10X1Q8NGY0 326 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 TRGV9Q99603 122 aa8.6□□□□□ -1.03
USP3-206ENST00000558157 IGKV2D-26A0A0A0MRZ7 120 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 SPRY3O43610 288 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 TWIST1Q15672 202 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 CFAP126Q5VTH2 177 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 TMEM14CQ9P0S9 112 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 RALYQ9UKM9 306 aaKnown RBP8.59□□□□□ -1.03
USP3-206ENST00000558157 TMEM262E9PQX1 116 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms