RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 C10orf113Q5VZT2 155 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 Q6ZRG5 221 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 NRARPQ7Z6K4 114 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 CCDC28AQ8IWP9 274 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 RNF141Q8WVD5 230 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 MGST2Q99735 147 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 LSM5Q9Y4Y9 91 aaKnown RBP7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 PRAC2D3DTV9 90 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 SLC17A3O00476 420 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 CCSO14618 274 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 LYRM1O43325 122 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 CAMLGP49069 296 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 TNP2Q05952 138 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 OR5I1Q13606 314 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 KIR3DS1Q14943 382 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 OPCMLQ14982 345 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 GFI1BQ5VTD9 330 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 MORN5Q5VZ52 161 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 C6orf223Q8N319 242 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 PARD6GQ9BYG4 376 aaPredicted RBP7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 C20orf85Q9H1P6 137 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 DNAJC4Q9NNZ3 241 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 LINC00588Q9Y4M8 146 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 PXMP4Q9Y6I8 212 aa7.74□□□□□ -1.17
CCDC88C-213ENST00000557455 FAM240BA0A1B0GVZ2 78 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 FAM25EA8MYX2 175 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 SNURFLB1AK76 121 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 H3BQ15 152 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 J3KRW8 73 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 IGLC2P0DOY2 106 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 CAV2P51636 162 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 GUK1Q16774 197 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 SSX7Q7RTT5 188 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 OR1L4Q8NGR5 311 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 SAT2Q96F10 170 aaPredicted RBP7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 ABCA13Q86UQ4 5058 aa7.73□□□□□ -1.17
CCDC88C-213ENST00000557455 TRAV26-1A0A087WT03 109 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GAGE12BA1L429 117 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 C5orf51A6NDU8 294 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 PLA2G10O15496 165 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GAGE7O76087 117 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 CST7O76096 145 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 RLN2P04090 185 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GAGE12FP0CL80 117 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GAGE12GP0CL81 117 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GAGE12IP0CL82 117 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 LEPP41159 167 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 MIC13Q5XKP0 118 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 GNPNAT1Q96EK6 184 aaPredicted RBP7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 PFDN5Q99471 154 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 UQCC1Q9NVA1 299 aa7.72□□□□□ -1.17
CCDC88C-213ENST00000557455 LRP1BQ9NZR2 4599 aa7.71□□□□□ -1.17
CCDC88C-213ENST00000557455 TRAV6A0A075B6T7 132 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 TRAV5A0A0B4J249 113 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 TRAV12-3A0A0B4J271 114 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 A0A0J9YY99 117 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 FAM24AA6NFZ4 105 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 C16orf90A8MZG2 172 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 TCRBP04435 133 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 CT45A10P0DMU9 189 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 PVALBP20472 110 aaPredicted RBP7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 M6PRP20645 277 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 AKAP14Q86UN6 197 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 C12orf45Q8N5I9 185 aaPredicted RBP7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 LINC00612Q8N6U2 182 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 RXFP4Q8TDU9 374 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF431Q8TF32 576 aaPredicted RBP7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF503Q96F45 646 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 ODF3Q96PU9 254 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 Q9H8V8 135 aa7.71□□□□□ -1.18
CCDC88C-213ENST00000557455 HSPG2P98160 4391 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 UBE2L5PA0A1B0GUS4 154 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 NPIPB6E9PJ23 425 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 HOXA5P20719 270 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 RPL29P47914 159 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 BAXQ07812 192 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 CHAC2Q8WUX2 184 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 C2orf50Q96LR7 162 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 SEC22CQ9BRL7 303 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 PYGO2Q9BRQ0 406 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 C11orf1Q9H5F2 150 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 SLC39A9Q9NUM3 307 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF586Q9NXT0 402 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 WDR83OSQ9Y284 106 aa7.7□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF253O75346 499 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 SLC25A5P05141 298 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 S100A11P31949 105 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 SULT1A1P50225 295 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 S100A10P60903 97 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 HBG1P69891 147 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 HBG2P69892 147 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 VWC2Q2TAL6 325 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 TTC32Q5I0X7 151 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 STX12Q86Y82 276 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 MRPL53Q96EL3 112 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 LYRM2Q9NU23 88 aaPredicted RBP7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 NUDT15Q9NV35 164 aa7.69□□□□□ -1.18
CCDC88C-213ENST00000557455 TRBV19A0A075B6N1 114 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 IGSF23A1L1A6 192 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 INMT-MINDY4F8WBC2 141 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms