RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KIR3DS1Q14943 382 aa12.73□□□□□ -0.37
SHMT2-231ENST00000557433 TWIST1Q15672 202 aa12.73□□□□□ -0.37
SHMT2-231ENST00000557433 C5orf64Q2M2E5 130 aa12.73□□□□□ -0.37
SHMT2-231ENST00000557433 FANCD2OSQ96PS1 177 aa12.73□□□□□ -0.37
SHMT2-231ENST00000557433 C21orf62Q9NYP8 219 aa12.73□□□□□ -0.37
SHMT2-231ENST00000557433 A0A0G2JLM5 398 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 NPYP01303 97 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 ZNF562Q6V9R5 426 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 OR2K2Q8NGT1 345 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 SMPXQ9UHP9 88 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 EGR2P11161 476 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-231ENST00000557433 HLA-DRB4P13762 266 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 RAB9AP51151 201 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 CSTL1Q9H114 145 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 ONECUT1Q9UBC0 465 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 HLA-DRB4X5D2U9 266 aa12.72□□□□□ -0.37
SHMT2-231ENST00000557433 TMSB15BA0A087X1C1 80 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 M0R1W7 72 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 FCER1GP30273 86 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 DLX1P56177 255 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 ASCL2Q99929 193 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 ZMAT4Q9H898 229 aa12.71□□□□□ -0.37
SHMT2-231ENST00000557433 UQCRFS1P47985 274 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 ARPC1AQ92747 370 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 TTC28Q96AY4 2481 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 CUL9Q8IWT3 2517 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 IGKV2-40A0A087WW87 121 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-231ENST00000557433 RBAKDNA6NC62 111 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 FABP5P3A8MUU1 101 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 OOSP1A8MZH6 123 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 F8W735 103 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-231ENST00000557433 H3BUT2 72 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 KLK10O43240 276 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 IGKV2D-40P01614 121 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-231ENST00000557433 FOXE3Q13461 319 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 CCDC144NLQ6NUI1 221 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 ABHD17AQ96GS6 310 aa12.7□□□□□ -0.38
SHMT2-231ENST00000557433 A0A1W2PPM0 123 aa12.69□□□□□ -0.38
SHMT2-231ENST00000557433 ATP5LO75964 103 aa12.69□□□□□ -0.38
SHMT2-231ENST00000557433 ODF3BA8MYP8 253 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 SMIM17P0DL12 118 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 NMUP48645 174 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 JMJD8Q96S16 334 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 NBEAQ8NFP9 2946 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-231ENST00000557433 FABP2P12104 132 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 EVI2AP22794 236 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 PRB3Q04118 309 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-231ENST00000557433 NEGR1Q7Z3B1 354 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 MEGF9Q9H1U4 602 aa12.68□□□□□ -0.38
SHMT2-231ENST00000557433 G3V4G9 280 aa12.67□□□□□ -0.38
SHMT2-231ENST00000557433 SMIM13P0DJ93 91 aa12.67□□□□□ -0.38
SHMT2-231ENST00000557433 PRTN3P24158 256 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 SRSF1Q07955 248 aaKnown RBP eCLIP12.66□□□□□ -0.38
SHMT2-231ENST00000557433 ODF1Q14990 250 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 ZNF672Q499Z4 452 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-231ENST00000557433 KLF17Q5JT82 389 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-231ENST00000557433 PRSS47A8MTI9 375 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 LEPP41159 167 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 ZNF80P51504 273 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-231ENST00000557433 PCP2Q8IVA1 136 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 BCL6BQ8N143 479 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-231ENST00000557433 Q8N8P6 123 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 TIMD4Q96H15 378 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 DKK2Q9UBU2 259 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 SH3BGRL2Q9UJC5 107 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 HILPDAQ9Y5L2 63 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 SPCS1Q9Y6A9 102 aa12.66□□□□□ -0.38
SHMT2-231ENST00000557433 LYNX1G3V0Z9 82 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 SMKR1H3BMG3 65 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 TNFRSF6BO95407 300 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 ORM1P02763 201 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 LYNX1P0DP58 116 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 EBI3Q14213 229 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 HES1Q14469 280 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 C1orf122Q6ZSJ8 110 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 Q8NA96 180 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 PSMG3-AS1Q96PY0 264 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 VGLL1Q99990 258 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 VKORC1Q9BQB6 163 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 SLC50A1Q9BRV3 221 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 SMAD5-AS1Q9Y6J3 95 aa12.65□□□□□ -0.38
SHMT2-231ENST00000557433 ZGRF1Q86YA3 2104 aa12.65□□□□□ -0.39
SHMT2-231ENST00000557433 PRRC2CQ9Y520 2896 aaKnown RBP12.65□□□□□ -0.39
SHMT2-231ENST00000557433 IGKCP01834 107 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 IGHG4P01861 327 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 CTSGP08311 255 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 KLK9Q2XQG4 91 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 MINOS1Q5TGZ0 78 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 PRSS57Q6UWY2 283 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 Q8N6K4 173 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 KLK9Q9UKQ9 250 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 HHLA3Q9XRX5 114 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 MINOS1-NBL1R4GNA1 71 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 ZNF575Q86XF7 245 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 Q8TAT8 98 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 S4R3C0 116 aa12.64□□□□□ -0.39
SHMT2-231ENST00000557433 DPM2O94777 84 aa12.63□□□□□ -0.39
SHMT2-231ENST00000557433 TAL2Q16559 108 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms