RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CSNK1G2-AS1Q8NCQ2 148 aa9.9□□□□□ -0.82
SHMT2-228ENST00000557302 ARPC5LQ9BPX5 153 aa9.9□□□□□ -0.82
SHMT2-228ENST00000557302 SLC35B3Q9H1N7 401 aa9.9□□□□□ -0.82
SHMT2-228ENST00000557302 hCG_2014768A0A024R1R8 64 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 A0A0D9SG52 128 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 A0A0J9YWU9 116 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 PRB4P10163 310 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-228ENST00000557302 CDC34P49427 236 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-228ENST00000557302 AMTNQ6UX39 209 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 TCTE3Q8IZS6 198 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 OR10J6PQ8NGY7 276 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 MUC7Q8TAX7 377 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 MRPL53Q96EL3 112 aaKnown RBP9.89□□□□□ -0.83
SHMT2-228ENST00000557302 ZNF503Q96F45 646 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 AAMDCQ9H7C9 122 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 CYTL1Q9NRR1 136 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 PRELID1Q9Y255 219 aa9.89□□□□□ -0.83
SHMT2-228ENST00000557302 PRAC2D3DTV9 90 aa9.88□□□□□ -0.83
SHMT2-228ENST00000557302 EIF3GO75821 320 aaKnown RBP eCLIP9.88□□□□□ -0.83
SHMT2-228ENST00000557302 AMBPP02760 352 aa9.88□□□□□ -0.83
SHMT2-228ENST00000557302 PQLC2Q6ZP29 291 aa9.88□□□□□ -0.83
SHMT2-228ENST00000557302 EXOC3-AS1Q8N2X6 119 aa9.88□□□□□ -0.83
SHMT2-228ENST00000557302 RPP25LQ8N5L8 163 aaKnown RBP9.88□□□□□ -0.83
SHMT2-228ENST00000557302 PPP1R14DQ9NXH3 145 aa9.88□□□□□ -0.83
SHMT2-228ENST00000557302 KANTRA0A1W2PQU2 76 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 ZNF705EA8MWA4 302 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-228ENST00000557302 C3orf84H3BNL1 204 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 BOLA2-SMG1P6H3BVE0 249 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 M0R3E3 92 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 BCL2L11O43521 198 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 ICAM4Q14773 271 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 AKAP14Q86UN6 197 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 PHYHIPLQ96FC7 376 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 X6R8D5 127 aa9.87□□□□□ -0.83
SHMT2-228ENST00000557302 M0R2Z0 102 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 HMGB3O15347 200 aaKnown RBP9.86□□□□□ -0.83
SHMT2-228ENST00000557302 PFDN1O60925 122 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 MIFP14174 115 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 RANP62826 216 aaKnown RBP9.86□□□□□ -0.83
SHMT2-228ENST00000557302 SPINK13Q1W4C9 94 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 AKR1C8PQ5T2L2 129 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 LYPD1Q8N2G4 141 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 IL17DQ8TAD2 202 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 RAB24Q969Q5 203 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 IGF2BP2-AS1Q96M15 143 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 ACTR3CQ9C0K3 210 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-228ENST00000557302 C11orf68Q9H3H3 251 aaKnown RBP9.86□□□□□ -0.83
SHMT2-228ENST00000557302 GOLT1BQ9Y3E0 138 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 DNAH7Q8WXX0 4024 aa9.86□□□□□ -0.83
SHMT2-228ENST00000557302 INSP01308 110 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 STAG3L2P0CL84 134 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 STAG3L3P0CL85 134 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 ARL14EPLP0DKL9 152 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 ZNF705AQ6ZN79 300 aaPredicted RBP9.85□□□□□ -0.83
SHMT2-228ENST00000557302 TMUB2Q71RG4 321 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 Q8NAQ8 132 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 ZNF471Q9BX82 626 aaPredicted RBP9.85□□□□□ -0.83
SHMT2-228ENST00000557302 Q9H3A6 140 aa9.85□□□□□ -0.83
SHMT2-228ENST00000557302 IGHV3OR16-12A0A075B7B8 117 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 IGHV4-28A0A0C4DH34 117 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 A0A1B0GVG6 124 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 NPIPB6E9PJ23 425 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 DEFB4AO15263 64 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 C1QBP02746 253 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 CSN1S1P47710 185 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 EIF5AP63241 154 aaKnown RBP9.84□□□□□ -0.83
SHMT2-228ENST00000557302 BAP18Q8IXM2 172 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 TMEM208Q9BTX3 173 aa9.84□□□□□ -0.83
SHMT2-228ENST00000557302 TRAV12-2A0A075B6T6 113 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 CTXND1A0A1B0GTU2 59 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 CRXO43186 299 aaPredicted RBP9.83□□□□□ -0.84
SHMT2-228ENST00000557302 CXorf1O96002 111 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 GCHFRP30047 84 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 TSPOP30536 169 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 CDKN1BP46527 198 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 C1orf158Q8N1D5 194 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 HYLS1Q96M11 299 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 ODF3Q96PU9 254 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 NEU1Q99519 415 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 OTORQ9NRC9 128 aa9.83□□□□□ -0.84
SHMT2-228ENST00000557302 IGKV2-40A0A087WW87 121 aaPredicted RBP9.82□□□□□ -0.84
SHMT2-228ENST00000557302 SMIM9A6NGZ8 99 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 IGKV2D-40P01614 121 aaPredicted RBP9.82□□□□□ -0.84
SHMT2-228ENST00000557302 SEC11BP0C7V7 166 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 CT45A10P0DMU9 189 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 LEPP41159 167 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 ERCC8Q13216 396 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 FAM74A1Q5RGS3 127 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 ZFAND6Q6FIF0 208 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 SSX7Q7RTT5 188 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 IQCF2Q8IXL9 164 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 RXFP4Q8TDU9 374 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 TMEM167BQ9NRX6 74 aa9.82□□□□□ -0.84
SHMT2-228ENST00000557302 HBE1P02100 147 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 RBMY1A1P0DJD3 496 aaKnown RBP9.81□□□□□ -0.84
SHMT2-228ENST00000557302 RBMY1CP0DJD4 496 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 TPT1P13693 172 aaKnown RBP9.81□□□□□ -0.84
SHMT2-228ENST00000557302 RBMY1FQ15415 496 aaKnown RBP9.81□□□□□ -0.84
SHMT2-228ENST00000557302 ZNF726P1Q15940 193 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 LGALSLQ3ZCW2 172 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms