RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RPUSD4Q96CM3 377 aaKnown RBP9.45□□□□□ -0.9
SHMT2-227ENST00000557269 Q9H3A6 140 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 SAV1Q9H4B6 383 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-227ENST00000557269 TUBA4BQ9H853 241 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 A0A0J9YX75 114 aa9.44□□□□□ -0.9
SHMT2-227ENST00000557269 H3BMM0 161 aa9.44□□□□□ -0.9
SHMT2-227ENST00000557269 FOXI2Q6ZQN5 318 aa9.44□□□□□ -0.9
SHMT2-227ENST00000557269 TRPT1Q86TN4 253 aaKnown RBP9.44□□□□□ -0.9
SHMT2-227ENST00000557269 TMEM167BQ9NRX6 74 aa9.44□□□□□ -0.9
SHMT2-227ENST00000557269 YTHDF2Q9Y5A9 579 aaKnown RBP9.44□□□□□ -0.9
SHMT2-227ENST00000557269 PGPA6NDG6 321 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 ZNF705EA8MWA4 302 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-227ENST00000557269 IGKV3-20P01619 116 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 HLA-DRB4P13762 266 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 UBE2G2P60604 165 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 TEX261Q6UWH6 196 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 OR8A1Q8NGG7 326 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 AAMDCQ9H7C9 122 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 OTORQ9NRC9 128 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 HLA-DRB4X5D2U9 266 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 AGRNO00468 2067 aa9.43□□□□□ -0.9
SHMT2-227ENST00000557269 LOC102724200A0A096LPH7 203 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-227ENST00000557269 TRAV1-1A0A0B4J248 108 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 GGTLC3B5MD39 225 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 CNN1P51911 297 aaKnown RBP9.42□□□□□ -0.9
SHMT2-227ENST00000557269 EBLN2Q6P2I7 272 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 SBSPONQ8IVN8 264 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 STHQ8IWL8 128 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 LYPD1Q8N2G4 141 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 ZNF680Q8NEM1 530 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 MRPL53Q96EL3 112 aaKnown RBP9.42□□□□□ -0.9
SHMT2-227ENST00000557269 ASCL2Q99929 193 aa9.42□□□□□ -0.9
SHMT2-227ENST00000557269 IGKV2-40A0A087WW87 121 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-227ENST00000557269 FAM74A7A6NL05 159 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 IGKV2D-40P01614 121 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-227ENST00000557269 GIG44P09565 113 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-227ENST00000557269 GNG5P63218 68 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 HIST1H1AQ02539 215 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-227ENST00000557269 ERCC8Q13216 396 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 HAGHQ16775 308 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 OR4B1Q8NGF8 309 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 PCNPQ8WW12 178 aaKnown RBP9.41□□□□□ -0.9
SHMT2-227ENST00000557269 CLEC5AQ9NY25 188 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 PRELID1Q9Y255 219 aa9.41□□□□□ -0.9
SHMT2-227ENST00000557269 A0A1W2PRE2 83 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 A8MTW9 85 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 PAGE4O60829 102 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 FXYD7P58549 80 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 SUMO1P63165 101 aaKnown RBP9.4□□□□□ -0.9
SHMT2-227ENST00000557269 AMTNQ6UX39 209 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 VGLL1Q99990 258 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 SLC35B3Q9H1N7 401 aa9.4□□□□□ -0.9
SHMT2-227ENST00000557269 DIRC3C9JPN6 131 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 NPIPB6E9PJ23 425 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 SLC25A5P05141 298 aaKnown RBP9.39□□□□□ -0.91
SHMT2-227ENST00000557269 CT45A10P0DMU9 189 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 ATP5G3P48201 142 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 IFITM2Q01629 132 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 AGPAT4-IT1Q9H0P7 198 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 GNG13Q9P2W3 67 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 RPH3ALQ9UNE2 315 aa9.39□□□□□ -0.91
SHMT2-227ENST00000557269 DUSP14O95147 198 aaKnown RBP9.38□□□□□ -0.91
SHMT2-227ENST00000557269 HBE1P02100 147 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 CSN1S1P47710 185 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 BLOC1S1P78537 153 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 CCDC28AQ8IWP9 274 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 OR10J6PQ8NGY7 276 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 LYPD6BQ8NI32 183 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 CMTM2Q8TAZ6 248 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 RXFP4Q8TDU9 374 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 CLUHP3Q96NS8 147 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 B9D2Q9BPU9 175 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 CSTL1Q9H114 145 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 RETNQ9HD89 108 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 EPDR1Q9UM22 224 aa9.38□□□□□ -0.91
SHMT2-227ENST00000557269 KIR2DL5BA0A0G2JN68 375 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 KIR2DL5BA0A0G2JPC4 375 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 CA1P00915 261 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-227ENST00000557269 IFNA7P01567 189 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 TCRAP04437 139 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 APOC4P55056 127 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 KIR3DS1Q14943 382 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 CST9LP1Q5W188 147 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 C9orf47Q6ZRZ4 202 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 GOLT1AQ6ZVE7 132 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 KIR2DL5AQ8N109 375 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 C5orf17Q8NAS9 161 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 KIR2DL5BQ8NHK3 375 aa9.37□□□□□ -0.91
SHMT2-227ENST00000557269 PRKDCP78527 4128 aaKnown RBP9.37□□□□□ -0.91
SHMT2-227ENST00000557269 TRAV8-1A0A0A6YYK1 113 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 M0R2Z0 102 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 SPINK13Q1W4C9 94 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 MORN3Q6PF18 240 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-227ENST00000557269 Q8TAT8 98 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 FAM19A4Q96LR4 140 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 SGK494Q96LW2 274 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 LINC00479Q96M42 142 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 XCL2Q9UBD3 114 aa9.36□□□□□ -0.91
SHMT2-227ENST00000557269 RBAKDNA6NC62 111 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 TEX46H3BTG2 121 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms