RNA–Protein interactions for RNA: ENST00000553527.1

TDP1-205, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-205ENST00000553527 LCE6AA0A183 80 aa17.15■□□□□ 0.34
TDP1-205ENST00000553527 H3BQ15 152 aa17.15■□□□□ 0.34
TDP1-205ENST00000553527 HIST1H1EP10412 219 aaKnown RBP17.15■□□□□ 0.34
TDP1-205ENST00000553527 EBLN2Q6P2I7 272 aa17.15■□□□□ 0.34
TDP1-205ENST00000553527 FOXI2Q6ZQN5 318 aa17.15■□□□□ 0.34
TDP1-205ENST00000553527 TMED6Q8WW62 240 aa17.15■□□□□ 0.34
TDP1-205ENST00000553527 HMGB3O15347 200 aaKnown RBP17.14■□□□□ 0.33
TDP1-205ENST00000553527 OR10J4P0C629 311 aa17.14■□□□□ 0.33
TDP1-205ENST00000553527 UBE2L3P68036 154 aaKnown RBP17.14■□□□□ 0.33
TDP1-205ENST00000553527 EIF5AL1Q6IS14 154 aaKnown RBP17.14■□□□□ 0.33
TDP1-205ENST00000553527 CSNK1G2-AS1Q8NCQ2 148 aa17.14■□□□□ 0.33
TDP1-205ENST00000553527 RAB24Q969Q5 203 aa17.14■□□□□ 0.33
TDP1-205ENST00000553527 SLC50A1Q9BRV3 221 aa17.14■□□□□ 0.33
TDP1-205ENST00000553527 ZNF586Q9NXT0 402 aa17.14■□□□□ 0.33
TDP1-205ENST00000553527 UMAD1C9J7I0 102 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 SLC17A3O00476 420 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 NANOS2P60321 138 aaKnown RBP17.13■□□□□ 0.33
TDP1-205ENST00000553527 PQLC2Q6ZP29 291 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 C11orf45Q8TAV5 145 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 BLNKQ8WV28 456 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 RNF141Q8WVD5 230 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 FXYD5Q96DB9 178 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 C1QTNF4Q9BXJ3 329 aa17.13■□□□□ 0.33
TDP1-205ENST00000553527 TRBV19A0A075B6N1 114 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 TRAV8-2A0A0B4J237 113 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 CTXND1A0A1B0GTU2 59 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 BOLA2-SMG1P6H3BVE0 249 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 RNF182Q8N6D2 247 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 ZNF503Q96F45 646 aa17.12■□□□□ 0.33
TDP1-205ENST00000553527 ZNF331Q9NQX6 463 aaPredicted RBP17.12■□□□□ 0.33
TDP1-205ENST00000553527 DYNC2H1Q8NCM8 4307 aaKnown RBP17.11■□□□□ 0.33
TDP1-205ENST00000553527 IGHV4-28A0A0C4DH34 117 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 STAG3L2P0CL84 134 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 STAG3L3P0CL85 134 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 RBMY1A1P0DJD3 496 aaKnown RBP17.11■□□□□ 0.33
TDP1-205ENST00000553527 RBMY1CP0DJD4 496 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 ARL14EPLP0DKL9 152 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 PDE6HQ13956 83 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 RBMY1FQ15415 496 aaKnown RBP17.11■□□□□ 0.33
TDP1-205ENST00000553527 SSX7Q7RTT5 188 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 Q8NAQ8 132 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 SLC35B3Q9H1N7 401 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 C11orf68Q9H3H3 251 aaKnown RBP17.11■□□□□ 0.33
TDP1-205ENST00000553527 X6R8D5 127 aa17.11■□□□□ 0.33
TDP1-205ENST00000553527 A0A0J9YX75 114 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 NUPR2A6NF83 97 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 ZNF705EA8MWA4 302 aaPredicted RBP17.1■□□□□ 0.33
TDP1-205ENST00000553527 ZNF253O75346 499 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 NBEAP1P0C6P0 100 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 ZNF726P1Q15940 193 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 CEMP1Q6PRD7 247 aaPredicted RBP17.1■□□□□ 0.33
TDP1-205ENST00000553527 PHLDA1Q8WV24 401 aaPredicted RBP17.1■□□□□ 0.33
TDP1-205ENST00000553527 SAT2Q96F10 170 aaPredicted RBP17.1■□□□□ 0.33
TDP1-205ENST00000553527 BOLA1Q9Y3E2 137 aa17.1■□□□□ 0.33
TDP1-205ENST00000553527 IGHV3OR16-12A0A075B7B8 117 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 ZNF705DP0CH99 300 aaPredicted RBP17.09■□□□□ 0.33
TDP1-205ENST00000553527 ZNF705BP0CI00 300 aaPredicted RBP17.09■□□□□ 0.33
TDP1-205ENST00000553527 PRB4P10163 310 aaPredicted RBP17.09■□□□□ 0.33
TDP1-205ENST00000553527 MIFP14174 115 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 HLA-DMBP28068 263 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 PSG9Q00887 426 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 ZNF738Q8NE65 137 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 FAM213BQ8TBF2 198 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 PLA2G2EQ9NZK7 142 aa17.09■□□□□ 0.33
TDP1-205ENST00000553527 CXorf1O96002 111 aa17.08■□□□□ 0.32
TDP1-205ENST00000553527 DPPA3Q6W0C5 159 aa17.08■□□□□ 0.32
TDP1-205ENST00000553527 IQCF2Q8IXL9 164 aa17.08■□□□□ 0.32
TDP1-205ENST00000553527 PHYHIPLQ96FC7 376 aa17.08■□□□□ 0.32
TDP1-205ENST00000553527 MAP1LC3B2A6NCE7 125 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 NDUFB4O95168 129 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 FHITP49789 147 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 PSG3Q16557 428 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 MAP1LC3BQ9GZQ8 125 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 AAMDCQ9H7C9 122 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 LYSTQ99698 3801 aa17.07■□□□□ 0.32
TDP1-205ENST00000553527 SACSQ9NZJ4 4579 aa17.06■□□□□ 0.32
TDP1-205ENST00000553527 GCHFRP30047 84 aa17.06■□□□□ 0.32
TDP1-205ENST00000553527 KLK5Q9Y337 293 aaPredicted RBP17.06■□□□□ 0.32
TDP1-205ENST00000553527 RAB5CP51148 216 aa17.05■□□□□ 0.32
TDP1-205ENST00000553527 CLUHP3Q96NS8 147 aa17.05■□□□□ 0.32
TDP1-205ENST00000553527 TMEM167BQ9NRX6 74 aa17.05■□□□□ 0.32
TDP1-205ENST00000553527 CNN1P51911 297 aaKnown RBP17.04■□□□□ 0.32
TDP1-205ENST00000553527 FGF8P55075 233 aaPredicted RBP17.04■□□□□ 0.32
TDP1-205ENST00000553527 EXOC3-AS1Q8N2X6 119 aa17.04■□□□□ 0.32
TDP1-205ENST00000553527 RPUSD4Q96CM3 377 aaKnown RBP17.04■□□□□ 0.32
TDP1-205ENST00000553527 DUSP14O95147 198 aaKnown RBP17.03■□□□□ 0.32
TDP1-205ENST00000553527 SULT1A2P50226 295 aa17.03■□□□□ 0.32
TDP1-205ENST00000553527 RANP62826 216 aaKnown RBP17.03■□□□□ 0.32
TDP1-205ENST00000553527 PRELID1Q9Y255 219 aa17.03■□□□□ 0.32
TDP1-205ENST00000553527 ICAM4Q14773 271 aa17.02■□□□□ 0.32
TDP1-205ENST00000553527 FAM74A1Q5RGS3 127 aa17.02■□□□□ 0.32
TDP1-205ENST00000553527 ALKAL2Q6UX46 152 aa17.02■□□□□ 0.32
TDP1-205ENST00000553527 LYPD1Q8N2G4 141 aa17.02■□□□□ 0.32
TDP1-205ENST00000553527 MRPL53Q96EL3 112 aaKnown RBP17.02■□□□□ 0.32
TDP1-205ENST00000553527 Q9H3A6 140 aa17.02■□□□□ 0.32
TDP1-205ENST00000553527 ZNF705FA8MVS1 300 aaPredicted RBP17.01■□□□□ 0.31
TDP1-205ENST00000553527 EMP1P54849 157 aa17.01■□□□□ 0.31
TDP1-205ENST00000553527 HIST1H1AQ02539 215 aaPredicted RBP17.01■□□□□ 0.31
TDP1-205ENST00000553527 SPINK13Q1W4C9 94 aa17.01■□□□□ 0.31
TDP1-205ENST00000553527 ZNF705AQ6ZN79 300 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms