RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 PHLDA3Q9Y5J5 127 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 FAM215AQ9Y5M1 114 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 LINC00312Q9Y6C7 94 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 PRRC2BQ5JSZ5 2229 aaKnown RBP1.09□□□□□ -2.24
LIMA1-209ENST00000552008 HTTP42858 3142 aa1.09□□□□□ -2.24
LIMA1-209ENST00000552008 NYNRINQ9P2P1 1898 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IGLV10-54A0A075B6I4 117 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 A0A0D9SG52 128 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 C3orf85A0A1B0GTC6 90 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 A0A1B0GTI1 187 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 KANTRA0A1W2PQU2 76 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 A6NIN4 97 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CEBPZOSA8MTT3 80 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM14DPA8MWL7 114 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 F6UZH7 168 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 H3BSH0 61 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GEMIN2O14893 280 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SYNGR1O43759 233 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SLC25A20O43772 301 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFB6O95139 128 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CRYZL1O95825 349 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR2H2O95918 312 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PPYP01298 95 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IFNA1P01562 189 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IFNA10P01566 189 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IGLV3-1P01715 115 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 HBZP02008 142 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PMP2P02689 132 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GYPAP02724 150 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 C1QCP02747 245 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CD3DP04234 171 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TCRBP04435 133 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IFNA4P05014 189 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IL5P05113 134 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CTSDP07339 412 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SULT1A3P0DMM9 295 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SULT1A4P0DMN0 295 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SLC25A6P12236 298 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 IL7P13232 177 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CD99P14209 185 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 S100A11P31949 105 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PPP1CCP36873 323 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 RPS27P42677 84 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 RAB5CP51148 216 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CEBPGP53567 150 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR10A3P58181 314 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 FXYD6P3P58550 94 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TAS2R45P59539 299 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TAS2R30P59541 319 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 FXYD4P59646 89 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 RRAS2P62070 204 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 POLR2GP62487 172 aaKnown RBP eCLIP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 HLA-DRB3P79483 266 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 AESQ08117 197 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SRSF6Q13247 344 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 HMGN3Q15651 99 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 C10orf91Q5T1B1 145 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TEX36Q5VZQ5 186 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 XAF1Q6GPH4 301 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 HEPN1Q6WQI6 88 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM91Q6ZNR0 172 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 Q6ZS49 121 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 C6orf201Q7Z4U5 140 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 FAM19A3Q7Z5A8 133 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM86BQ8N661 226 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR10P1Q8NGE3 313 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR4X2Q8NGF9 303 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR13C8Q8NGS7 320 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 OR51H1Q8NH63 302 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF431Q8TF32 576 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 Q8WTZ3 238 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SMIM4Q8WVI0 70 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GNPNAT1Q96EK6 184 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SMIM12Q96EX1 92 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 ADAT3Q96EY9 351 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 ARHGAP5-AS1Q96IT6 56 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PFDN5Q99471 154 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CCL13Q99616 98 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 WFDC6Q9BQY6 131 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GINS3Q9BRX5 216 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PBDC1Q9BVG4 233 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PECRQ9BY49 303 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 REG4Q9BYZ8 158 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TLNRD1Q9H1K6 362 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM133Q9H2Q1 129 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 BANF2Q9H503 90 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 HES4Q9HCC6 221 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 SLC39A9Q9NUM3 307 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GSKIPQ9P0R6 139 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 AK3Q9UIJ7 227 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 RPUSD1Q9UJJ7 312 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 LSM2Q9Y333 95 aaKnown RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 ALG5Q9Y673 324 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 U3KQ87 197 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 PTPRDP23468 1912 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 CHD9Q3L8U1 2897 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 MUC22E2RYF6 1773 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-209ENST00000552008 TRANK1O15050 2925 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 KIAA1549LQ6ZVL6 1849 aa1.08□□□□□ -2.24
LIMA1-209ENST00000552008 GBF1Q92538 1859 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms