RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 FOXI2Q6ZQN5 318 aa15.65■□□□□ 0.1
VPS29-206ENST00000549578 SAV1Q9H4B6 383 aaPredicted RBP15.65■□□□□ 0.1
VPS29-206ENST00000549578 CLEC5AQ9NY25 188 aa15.65■□□□□ 0.1
VPS29-206ENST00000549578 A8MZ25 164 aa15.64■□□□□ 0.09
VPS29-206ENST00000549578 PRAC2D3DTV9 90 aa15.64■□□□□ 0.09
VPS29-206ENST00000549578 ZNF705DP0CH99 300 aaPredicted RBP15.64■□□□□ 0.09
VPS29-206ENST00000549578 ZNF705BP0CI00 300 aaPredicted RBP15.64■□□□□ 0.09
VPS29-206ENST00000549578 RPL35AP18077 110 aaKnown RBP15.64■□□□□ 0.09
VPS29-206ENST00000549578 STHQ8IWL8 128 aa15.64■□□□□ 0.09
VPS29-206ENST00000549578 LYPD1Q8N2G4 141 aa15.64■□□□□ 0.09
VPS29-206ENST00000549578 UBE2G2P60604 165 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 EBLN2Q6P2I7 272 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 OTORQ9NRC9 128 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 PRELID1Q9Y255 219 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 A0A0J9YX75 114 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 PGPA6NDG6 321 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 H3BMM0 161 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 HLA-DRB4P13762 266 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 ZNF680Q8NEM1 530 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 MRPL53Q96EL3 112 aaKnown RBP15.63■□□□□ 0.09
VPS29-206ENST00000549578 YTHDF2Q9Y5A9 579 aaKnown RBP15.63■□□□□ 0.09
VPS29-206ENST00000549578 HLA-DRB4X5D2U9 266 aa15.63■□□□□ 0.09
VPS29-206ENST00000549578 TRAV1-1A0A0B4J248 108 aa15.62■□□□□ 0.09
VPS29-206ENST00000549578 IGKV3-20P01619 116 aa15.62■□□□□ 0.09
VPS29-206ENST00000549578 CCL20P78556 96 aa15.62■□□□□ 0.09
VPS29-206ENST00000549578 LINC00322Q6ZN03 302 aaPredicted RBP15.62■□□□□ 0.09
VPS29-206ENST00000549578 TRPT1Q86TN4 253 aaKnown RBP15.62■□□□□ 0.09
VPS29-206ENST00000549578 OR8A1Q8NGG7 326 aa15.62■□□□□ 0.09
VPS29-206ENST00000549578 LOC102724200A0A096LPH7 203 aaPredicted RBP15.61■□□□□ 0.09
VPS29-206ENST00000549578 GGTLC3B5MD39 225 aa15.61■□□□□ 0.09
VPS29-206ENST00000549578 HIST1H1AQ02539 215 aaPredicted RBP15.61■□□□□ 0.09
VPS29-206ENST00000549578 OR4B1Q8NGF8 309 aa15.61■□□□□ 0.09
VPS29-206ENST00000549578 HBE1P02100 147 aa15.6■□□□□ 0.09
VPS29-206ENST00000549578 CNN1P51911 297 aaKnown RBP15.6■□□□□ 0.09
VPS29-206ENST00000549578 A0A1W2PRE2 83 aa15.59■□□□□ 0.09
VPS29-206ENST00000549578 FAM74A7A6NL05 159 aa15.59■□□□□ 0.09
VPS29-206ENST00000549578 TEX46H3BTG2 121 aa15.59■□□□□ 0.09
VPS29-206ENST00000549578 SUMO1P63165 101 aaKnown RBP15.59■□□□□ 0.09
VPS29-206ENST00000549578 BLOC1S1P78537 153 aa15.59■□□□□ 0.09
VPS29-206ENST00000549578 RPH3ALQ9UNE2 315 aa15.59■□□□□ 0.09
VPS29-206ENST00000549578 PRKDCP78527 4128 aaKnown RBP15.59■□□□□ 0.09
VPS29-206ENST00000549578 IGKV2-40A0A087WW87 121 aaPredicted RBP15.58■□□□□ 0.09
VPS29-206ENST00000549578 IFNA7P01567 189 aa15.58■□□□□ 0.09
VPS29-206ENST00000549578 IGKV2D-40P01614 121 aaPredicted RBP15.58■□□□□ 0.09
VPS29-206ENST00000549578 SLC25A5P05141 298 aaKnown RBP15.58■□□□□ 0.09
VPS29-206ENST00000549578 CSN1S1P47710 185 aa15.58■□□□□ 0.09
VPS29-206ENST00000549578 CMTM2Q8TAZ6 248 aa15.58■□□□□ 0.09
VPS29-206ENST00000549578 PAGE4O60829 102 aa15.58■□□□□ 0.08
VPS29-206ENST00000549578 GNG5P63218 68 aa15.58■□□□□ 0.08
VPS29-206ENST00000549578 OR10J6PQ8NGY7 276 aa15.58■□□□□ 0.08
VPS29-206ENST00000549578 PCNPQ8WW12 178 aaKnown RBP15.58■□□□□ 0.08
VPS29-206ENST00000549578 GNG13Q9P2W3 67 aa15.58■□□□□ 0.08
VPS29-206ENST00000549578 DUSP14O95147 198 aaKnown RBP15.57■□□□□ 0.08
VPS29-206ENST00000549578 CST9LP1Q5W188 147 aa15.57■□□□□ 0.08
VPS29-206ENST00000549578 RXFP4Q8TDU9 374 aa15.57■□□□□ 0.08
VPS29-206ENST00000549578 DIRC3C9JPN6 131 aa15.56■□□□□ 0.08
VPS29-206ENST00000549578 ERCC8Q13216 396 aa15.56■□□□□ 0.08
VPS29-206ENST00000549578 HAGHQ16775 308 aa15.56■□□□□ 0.08
VPS29-206ENST00000549578 C5orf17Q8NAS9 161 aa15.56■□□□□ 0.08
VPS29-206ENST00000549578 ASCL2Q99929 193 aa15.56■□□□□ 0.08
VPS29-206ENST00000549578 A8MTW9 85 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 ATP5G3P48201 142 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 PPT1P50897 306 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 APOC4P55056 127 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 SBSPONQ8IVN8 264 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 VGLL1Q99990 258 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 CSTL1Q9H114 145 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 SLC35B3Q9H1N7 401 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 ARL2-SNX15V9GYD0 113 aa15.55■□□□□ 0.08
VPS29-206ENST00000549578 NPIPB6E9PJ23 425 aa15.54■□□□□ 0.08
VPS29-206ENST00000549578 FXYD7P58549 80 aa15.54■□□□□ 0.08
VPS29-206ENST00000549578 AMTNQ6UX39 209 aa15.54■□□□□ 0.08
VPS29-206ENST00000549578 GOLT1AQ6ZVE7 132 aa15.54■□□□□ 0.08
VPS29-206ENST00000549578 CLUHP3Q96NS8 147 aa15.54■□□□□ 0.08
VPS29-206ENST00000549578 KIR2DL5BA0A0G2JN68 375 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 KIR2DL5BA0A0G2JPC4 375 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 CA1P00915 261 aaPredicted RBP15.53■□□□□ 0.08
VPS29-206ENST00000549578 KIR2DL5AQ8N109 375 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 KIR2DL5BQ8NHK3 375 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 LYPD6BQ8NI32 183 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 NKX6-2Q9C056 277 aaPredicted RBP15.53■□□□□ 0.08
VPS29-206ENST00000549578 AGPAT4-IT1Q9H0P7 198 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 MANBALQ9NQG1 85 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 EPDR1Q9UM22 224 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 TCRAP04437 139 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 GIG44P09565 113 aaPredicted RBP15.53■□□□□ 0.08
VPS29-206ENST00000549578 IFITM2Q01629 132 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 B9D2Q9BPU9 175 aa15.53■□□□□ 0.08
VPS29-206ENST00000549578 CT45A10P0DMU9 189 aa15.52■□□□□ 0.07
VPS29-206ENST00000549578 NUTF2P61970 127 aaKnown RBP15.52■□□□□ 0.07
VPS29-206ENST00000549578 MORN3Q6PF18 240 aaPredicted RBP15.52■□□□□ 0.07
VPS29-206ENST00000549578 C9orf47Q6ZRZ4 202 aa15.52■□□□□ 0.07
VPS29-206ENST00000549578 CCDC28AQ8IWP9 274 aa15.52■□□□□ 0.07
VPS29-206ENST00000549578 ARL6IP6Q8N6S5 226 aa15.52■□□□□ 0.07
VPS29-206ENST00000549578 PPP1R14DQ9NXH3 145 aa15.52■□□□□ 0.07
VPS29-206ENST00000549578 RBAKDNA6NC62 111 aa15.51■□□□□ 0.07
VPS29-206ENST00000549578 M0R2Z0 102 aa15.51■□□□□ 0.07
VPS29-206ENST00000549578 SPINK13Q1W4C9 94 aa15.51■□□□□ 0.07
VPS29-206ENST00000549578 TMEM78Q5T7P6 136 aa15.51■□□□□ 0.07
VPS29-206ENST00000549578 Q8TAT8 98 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms