RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NBL1P41271 181 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 C8orf49Q96NF6 230 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 YPEL3P61236 119 aaPredicted RBP12.48□□□□□ -0.41
CUX1-211ENST00000546411 DNLZQ5SXM8 178 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 COL25A1Q9BXS0 654 aaPredicted RBP12.48□□□□□ -0.41
CUX1-211ENST00000546411 GUSBP1Q15486 140 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 PATE2Q6UY27 113 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 KAAG1Q9UBP8 84 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 POLQO75417 2590 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 P0C879 139 aa12.48□□□□□ -0.41
CUX1-211ENST00000546411 ASIPP42127 132 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 MINOS1Q5TGZ0 78 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 OR1N2Q8NGR9 330 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 HIST1H4GQ99525 98 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 MINOS1-NBL1R4GNA1 71 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 A0A0G2JLM5 398 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 Q8NA96 180 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 NAA38Q9BRA0 125 aaKnown RBP12.47□□□□□ -0.41
CUX1-211ENST00000546411 H7C2G1 150 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 SLC50A1Q9BRV3 221 aa12.47□□□□□ -0.41
CUX1-211ENST00000546411 ABCA12Q86UK0 2595 aa12.46□□□□□ -0.41
CUX1-211ENST00000546411 TRBV19A0A075B6N1 114 aa12.46□□□□□ -0.41
CUX1-211ENST00000546411 UNQ6494/PRO21346Q6UXR6 183 aa12.46□□□□□ -0.41
CUX1-211ENST00000546411 NDUFA3O95167 84 aa12.46□□□□□ -0.42
CUX1-211ENST00000546411 SNRPD3P62318 126 aaKnown RBP12.46□□□□□ -0.42
CUX1-211ENST00000546411 SIGLEC15Q6ZMC9 328 aa12.46□□□□□ -0.42
CUX1-211ENST00000546411 LCNL1Q6ZST4 164 aa12.46□□□□□ -0.42
CUX1-211ENST00000546411 ZNF256Q9Y2P7 627 aaPredicted RBP12.46□□□□□ -0.42
CUX1-211ENST00000546411 HLA-DMBP28068 263 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 Q0VG73 95 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 SNHG12Q9BXW3 62 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 JKAMPQ9P055 326 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 HBDP02042 147 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 TSPOP30536 169 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 IFI27P40305 119 aaPredicted RBP12.45□□□□□ -0.42
CUX1-211ENST00000546411 HERVK_113P61574 105 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 PYGO2Q9BRQ0 406 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 HIVEP2P31629 2446 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 TMEM75Q8N9X5 138 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 MOB4Q9Y3A3 225 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 CD7P09564 240 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 IFI27L1Q96BM0 104 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 NPFFR1Q9GZQ6 430 aa12.45□□□□□ -0.42
CUX1-211ENST00000546411 LOC107984156A0A0G2JMH3 177 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 A0A1B0GW15 77 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 ARL17AQ8IVW1 177 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 A0A1W2PRX2 142 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 J3QR89 54 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 ZNF688P0C7X2 276 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 PSMB2P49721 201 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 TDRG1Q3Y452 100 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 SCGB3A1Q96QR1 104 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 FAM120AOSQ5T036 256 aa12.44□□□□□ -0.42
CUX1-211ENST00000546411 CGB3P0DN86 165 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 CGB7P0DN87 165 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 MPV17L2Q567V2 206 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 ZNF491Q8N8L2 437 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 A0A087X0K7 114 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 SYS1-DBNDD2H3BUS1 97 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 PRSS2P07478 247 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 NUTF2P61970 127 aaKnown RBP12.43□□□□□ -0.42
CUX1-211ENST00000546411 TMEM170BQ5T4T1 132 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 SFTA2Q6UW10 78 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 CHCHD1Q96BP2 118 aaKnown RBP12.43□□□□□ -0.42
CUX1-211ENST00000546411 ZC2HC1AQ96GY0 325 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 KIR2DL4Q99706 377 aa12.43□□□□□ -0.42
CUX1-211ENST00000546411 OOSP1A8MZH6 123 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 JMJD1CQ15652 2540 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 OR11H12B2RN74 326 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 IGKV1-17P01599 117 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 MAJINQ3KP22 176 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 RASL11AQ6T310 242 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 THAP8Q8NA92 274 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 OR11H1Q8NG94 326 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 OR11H2Q8NH07 326 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 FAM167A-AS1Q96KT0 104 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 ALKBH7Q9BT30 221 aaPredicted RBP12.42□□□□□ -0.42
CUX1-211ENST00000546411 SMIM27A0A1W2PRY6 76 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 TDGF1P3P51864 188 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 TMEM249Q2WGJ8 235 aa12.42□□□□□ -0.42
CUX1-211ENST00000546411 MRPL27Q9P0M9 148 aaKnown RBP12.42□□□□□ -0.42
CUX1-211ENST00000546411 OVOL3O00110 214 aa12.41□□□□□ -0.42
CUX1-211ENST00000546411 PSMG4Q5JS54 123 aa12.41□□□□□ -0.42
CUX1-211ENST00000546411 PET117Q6UWS5 81 aa12.41□□□□□ -0.42
CUX1-211ENST00000546411 DSCAMO60469 2012 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 FCN3O75636 299 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 FABP2P12104 132 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 SYT8Q8NBV8 401 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 OR4X2Q8NGF9 303 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 CPAMD8Q8IZJ3 1885 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 ITLN2Q8WWU7 325 aaPredicted RBP12.4□□□□□ -0.42
CUX1-211ENST00000546411 VGLL1Q99990 258 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 UBE2E1P51965 193 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 CR1LQ2VPA4 569 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 IGF2-ASQ6U949 168 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 STPG4Q8N801 248 aa12.4□□□□□ -0.42
CUX1-211ENST00000546411 LYPD1Q8N2G4 141 aa12.39□□□□□ -0.43
CUX1-211ENST00000546411 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.39□□□□□ -0.43
CUX1-211ENST00000546411 JMJD8Q96S16 334 aa12.39□□□□□ -0.43
CUX1-211ENST00000546411 TRAV21A0A0B4J279 112 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms