RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HNF1AP20823 631 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 ARL3P36405 182 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 FOXE3Q13461 319 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 LY6EQ16553 131 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 SAPCD1Q5SSQ6 148 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 CLEC19AQ6UXS0 136 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 ATP5L2Q7Z4Y8 100 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 RNF152Q8N8N0 203 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 DAZAP1Q96EP5 407 aaKnown RBP4.78□□□□□ -1.64
SYNE1-239ENST00000545694 MLST8Q9BVC4 326 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 GFRA4Q9GZZ7 299 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 GNB4Q9HAV0 340 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM160Q9NX00 188 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 V9GYV3 84 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 NBPF19A0A087WUL8 3843 aa4.78□□□□□ -1.64
SYNE1-239ENST00000545694 SONP18583 2426 aaKnown RBP4.77□□□□□ -1.65
SYNE1-239ENST00000545694 SMIM27A0A1W2PRY6 76 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF320A2RRD8 509 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 LINC01548A6NM66 108 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF705GA8MUZ8 300 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-239ENST00000545694 DIRC3C9JPN6 131 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 UBE2CO00762 179 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 GATCO43716 136 aaKnown RBP4.77□□□□□ -1.65
SYNE1-239ENST00000545694 IGHV4-59P01825 116 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 MGST1P10620 155 aaKnown RBP4.77□□□□□ -1.65
SYNE1-239ENST00000545694 PF4V1P10720 104 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 PSMB8P28062 276 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 BLCAPP62952 87 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 PSG3Q16557 428 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 FAM106AQ4KMX7 169 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 LEMD1Q68G75 181 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 Q6AWC8 147 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 Q86TA4 180 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 GPHB5Q86YW7 130 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 Q8N2B8 174 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 GNB1LQ9BYB4 327 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF331Q9NQX6 463 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-239ENST00000545694 PPP1R14DQ9NXH3 145 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 SVEP1Q4LDE5 3571 aa4.77□□□□□ -1.65
SYNE1-239ENST00000545694 A0A1B0GW15 77 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 XKRY2A2RUG3 117 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 IZUMO1RA6ND01 250 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 PGPEP1LA6NFU8 196 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF785A8K8V0 405 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 CD5LO43866 347 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BKO60814 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 P01737 135 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HLA-DQA1P01909 254 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 TRGC2P03986 189 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BJP06899 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 CT45A10P0DMU9 189 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BOP23527 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BBP33778 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BDP58876 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BCP62807 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 SRSF2Q01130 221 aaKnown RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST2H2BEQ16778 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 COA6Q5JTJ3 125 aaKnown RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 ACTL10Q5JWF8 245 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 C16orf54Q6UWD8 224 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 GOLT1AQ6ZVE7 132 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 CIARTQ8N365 385 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 OR4X2Q8NGF9 303 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 MYOZ3Q8TDC0 251 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 WIPF2Q8TF74 440 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 TSKUQ8WUA8 353 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BHQ93079 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 MS4A10Q96PG2 267 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BNQ99877 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H2BMQ99879 126 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 NDFIP1Q9BT67 221 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 PEF1Q9UBV8 284 aaKnown RBP4.76□□□□□ -1.65
SYNE1-239ENST00000545694 NAT8BQ9UHF3 227 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 PSG8Q9UQ74 426 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 UFC1Q9Y3C8 167 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 LENEPQ9Y5L5 61 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 TRAPPC1Q9Y5R8 145 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 ACANP16112 2415 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 PDZD2O15018 2839 aa4.76□□□□□ -1.65
SYNE1-239ENST00000545694 TRBV7-9A0A0J9YWB2 115 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 CLPSL1A2RUU4 121 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 C19orf71A6NCJ1 209 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 SH2D7A6NKC9 451 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 PHOX2AO14813 284 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 IGLV2-11P01706 119 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 IGHV3-23P01764 117 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 CDX1P47902 265 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 FOXA3P55318 350 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 RPS20P60866 119 aaKnown RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 GNG5P63218 68 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 OR5I1Q13606 314 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 BCL6BQ8N143 479 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 EXOC3-AS1Q8N2X6 119 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 GBGT1Q8N5D6 347 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 NUDT10Q8NFP7 164 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 NUDT11Q96G61 164 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 UBE2E2Q96LR5 201 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 RPP21Q9H633 154 aaKnown RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 DAZ1Q9NQZ3 744 aaKnown RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms