RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ADAMTSL5Q6ZMM2 481 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 FMC1Q96HJ9 113 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 C16orf92Q96LL3 132 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 SIGLEC8Q9NYZ4 499 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 TEP1Q99973 2627 aaKnown RBP13.4□□□□□ -0.26
CLIP1-215ENST00000541108 TRAV8-2A0A0B4J237 113 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 ISLRO14498 428 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 OVOL1O14753 267 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 CSN3P07498 182 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 GNG4P50150 75 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 RPL23P62829 140 aaKnown RBP13.4□□□□□ -0.26
CLIP1-215ENST00000541108 RHEBQ15382 184 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 LCN12Q6JVE5 192 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 LINC00479Q96M42 142 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 TRBV6-1A0A0K0K1D8 114 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 FBLL1A6NHQ2 334 aaKnown RBP13.39□□□□□ -0.27
CLIP1-215ENST00000541108 ATRAIDQ6UW56 229 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 LINC01551Q86U37 167 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 TMEM75Q8N9X5 138 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 SMIM12Q96EX1 92 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 CITED1Q99966 193 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 RPH3ALQ9UNE2 315 aa13.39□□□□□ -0.27
CLIP1-215ENST00000541108 CENPWQ5EE01 88 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 IGFL4Q6B9Z1 124 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 GOLT1AQ6ZVE7 132 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 OCC1Q8TAD7 63 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 DCANP1Q8TF63 244 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 IGF2BP2-AS1Q96M15 143 aa13.38□□□□□ -0.27
CLIP1-215ENST00000541108 C7orf77A4D0Y5 90 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 PSG3Q16557 428 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 TRAV34A0A0B4J273 112 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 RBAKDNA6NC62 111 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 IGLV2-11P01706 119 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 HLA-DMBP28068 263 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 ID1P41134 155 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 PAFAH1B2P68402 229 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 ADIRFQ15847 76 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 BAGE2Q86Y30 109 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 RNF182Q8N6D2 247 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 MS4A6AQ9H2W1 248 aa13.37□□□□□ -0.27
CLIP1-215ENST00000541108 A0A087WWC5 75 aa13.36□□□□□ -0.27
CLIP1-215ENST00000541108 LTAP01374 205 aa13.36□□□□□ -0.27
CLIP1-215ENST00000541108 KRTAP24-1Q3LI83 254 aa13.36□□□□□ -0.27
CLIP1-215ENST00000541108 IGKV3-7A0A075B6H7 116 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 TRAV2A0A0B4J234 112 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 PGPEP1LA6NFU8 196 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 ZNF705FA8MVS1 300 aaPredicted RBP13.35□□□□□ -0.27
CLIP1-215ENST00000541108 FLI1Q01543 452 aaPredicted RBP13.35□□□□□ -0.27
CLIP1-215ENST00000541108 DEFB114Q30KQ6 69 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 RPS10P5Q9NQ39 176 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 ZFP30Q9Y2G7 519 aa13.35□□□□□ -0.27
CLIP1-215ENST00000541108 K7EQG2 157 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 DNASE2O00115 360 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-215ENST00000541108 TSPAN4O14817 238 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 IGLV2-8P01709 118 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 RBPMS2Q6ZRY4 209 aaKnown RBP13.34□□□□□ -0.27
CLIP1-215ENST00000541108 PRIMA1Q86XR5 153 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 DYNLRB2Q8TF09 96 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 ISOC2Q96AB3 205 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 MLST8Q9BVC4 326 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 TMEM242Q9NWH2 141 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 TRAV8-1A0A0A6YYK1 113 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 TRAV25A0A0B4J276 109 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 GBGT1Q8N5D6 347 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 SGK494Q96LW2 274 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 PSG8Q9UQ74 426 aa13.34□□□□□ -0.27
CLIP1-215ENST00000541108 WNK1Q9H4A3 2382 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 SCO1O75880 301 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 GCGP01275 180 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 PF4P02776 101 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 MT-ND4LP03901 98 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 SNRPD3P62318 126 aaKnown RBP13.33□□□□□ -0.28
CLIP1-215ENST00000541108 Q86TA4 180 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 TMEM183AQ8IXX5 376 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 ANAPC16Q96DE5 110 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 C20orf173Q96LM9 149 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 CTDSP1Q9GZU7 261 aa13.33□□□□□ -0.28
CLIP1-215ENST00000541108 AURKAIP1Q9NWT8 199 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-215ENST00000541108 K7EN84 100 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 SAPCD1Q5SSQ6 148 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 PRNTQ86SH4 94 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 BIN3Q9NQY0 253 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 PPP1R14DQ9NXH3 145 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 SELENOKQ9Y6D0 94 aa13.32□□□□□ -0.28
CLIP1-215ENST00000541108 IGKV2-40A0A087WW87 121 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-215ENST00000541108 PRAC2D3DTV9 90 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 IGKV2D-40P01614 121 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-215ENST00000541108 RNF212Q495C1 297 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 C9orf47Q6ZRZ4 202 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 WFDC3Q8IUB2 231 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 TMEM61Q8N0U2 210 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 ZNF738Q8NE65 137 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 PPP1R2P9O14990 202 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 LINC00482Q8N8I6 264 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 SFRP2Q96HF1 295 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 VGLL1Q99990 258 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 TUBA4BQ9H853 241 aa13.31□□□□□ -0.28
CLIP1-215ENST00000541108 CXorf65A6NEN9 183 aa13.3□□□□□ -0.28
CLIP1-215ENST00000541108 MGST1P10620 155 aaKnown RBP13.3□□□□□ -0.28
CLIP1-215ENST00000541108 CD300EQ496F6 205 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms