RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 PSG3Q16557 428 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 ZNF506Q5JVG8 444 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 EXOC3-AS1Q8N2X6 119 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 GBGT1Q8N5D6 347 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 C5orf17Q8NAS9 161 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 TXNDC17Q9BRA2 123 aa7.82□□□□□ -1.16
VPS33A-204ENST00000540669 NKX6-2Q9C056 277 aaPredicted RBP7.82□□□□□ -1.16
VPS33A-204ENST00000540669 FBN3Q75N90 2809 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 LINC00862A6NCI5 91 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 PAGE4O60829 102 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 CD7P09564 240 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 ZNF688P0C7X2 276 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 ATP5G3P48201 142 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 PAFAH1B2P68402 229 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 MEF2BQ02080 365 aaPredicted RBP7.81□□□□□ -1.16
VPS33A-204ENST00000540669 ICAM4Q14773 271 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 RNF182Q8N6D2 247 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 C2CD4CQ8TF44 421 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 BLNKQ8WV28 456 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 CITED4Q96RK1 184 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 PPP1R14DQ9NXH3 145 aa7.81□□□□□ -1.16
VPS33A-204ENST00000540669 IGKV3-7A0A075B6H7 116 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 A0A0J9YX75 114 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 A0A1B0GV50 99 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 RBAKDNA6NC62 111 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 A8MZ25 164 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 PRAC2D3DTV9 90 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 NPIPB6E9PJ23 425 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 IGLV2-11P01706 119 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 SLC25A5P05141 298 aaKnown RBP7.8□□□□□ -1.16
VPS33A-204ENST00000540669 HLA-DRB4P13762 266 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 RANP62826 216 aaKnown RBP7.8□□□□□ -1.16
VPS33A-204ENST00000540669 IGFL4Q6B9Z1 124 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 AMTNQ6UX39 209 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 FOXI2Q6ZQN5 318 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 EIF4E3Q8N5X7 224 aaKnown RBP7.8□□□□□ -1.16
VPS33A-204ENST00000540669 C16orf92Q96LL3 132 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 FAM19A4Q96LR4 140 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 SAV1Q9H4B6 383 aaPredicted RBP7.8□□□□□ -1.16
VPS33A-204ENST00000540669 GNG13Q9P2W3 67 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 KLF12Q9Y4X4 402 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 HLA-DRB4X5D2U9 266 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 TENM3Q9P273 2699 aa7.8□□□□□ -1.16
VPS33A-204ENST00000540669 TRBV6-1A0A0K0K1D8 114 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 SERTM2A0A1B0GWG4 89 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 RAB19A4D1S5 217 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 DIRC3C9JPN6 131 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 TMEM250H0YL14 139 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 IFNA1P01562 189 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 TCRAP04437 139 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 ID1P41134 155 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 DEFB1P60022 68 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 UBE2G2P60604 165 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 SNRPD3P62318 126 aaKnown RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 RPL11P62913 178 aaKnown RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 GUCA2BQ16661 112 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 PSMG4Q5JS54 123 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 GDF5OSQ5U4N7 250 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 LINC00322Q6ZN03 302 aaPredicted RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 C9orf47Q6ZRZ4 202 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 COX8CQ7Z4L0 72 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 TRPT1Q86TN4 253 aaKnown RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 APRG1Q8IVJ8 170 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 RPUSD4Q96CM3 377 aaKnown RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 ODF3Q96PU9 254 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 ATG101Q9BSB4 218 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 WFDC10AQ9H1F0 79 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 SMDT1Q9H4I9 107 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 AAMDCQ9H7C9 122 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 AURKAIP1Q9NWT8 199 aaPredicted RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 VAX2Q9UIW0 290 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 HUWE1Q7Z6Z7 4374 aaKnown RBP7.79□□□□□ -1.16
VPS33A-204ENST00000540669 COL7A1Q02388 2944 aa7.79□□□□□ -1.16
VPS33A-204ENST00000540669 TRBV7-9A0A0J9YWB2 115 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 RBMY1BA6NDE4 496 aaKnown RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 PGPA6NDG6 321 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 RBMY1EA6NEQ0 496 aaKnown RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 RBFOX3A6NFN3 312 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 ZNF705FA8MVS1 300 aaPredicted RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 OR11H12B2RN74 326 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 C9JQL5 133 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 C11orf94C9JXX5 98 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 DNASE2O00115 360 aaPredicted RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 PEX7O00628 323 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 RBMY1DP0C7P1 496 aaKnown RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 TFPI2P48307 235 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 CMC4P56277 68 aaPredicted RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 DEFB131AP59861 70 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 SUMO1P63165 101 aaKnown RBP7.78□□□□□ -1.16
VPS33A-204ENST00000540669 ZNF124Q15973 351 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 DEFB121Q5J5C9 76 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 TOR2AQ5JU69 321 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 IQCF2Q8IXL9 164 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 CYB561D1Q8N8Q1 229 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 OR8A1Q8NGG7 326 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 RXFP4Q8TDU9 374 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 HIST1H2BAQ96A08 127 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 EPDR1Q9UM22 224 aa7.78□□□□□ -1.16
VPS33A-204ENST00000540669 TRBV20OR9-2A0A075B6H5 130 aa7.77□□□□□ -1.17
VPS33A-204ENST00000540669 SCO2A0A1W2PP80 73 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms