RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 RHOGP84095 191 aa13.19□□□□□ -0.3
USP28-208ENST00000540438 NEU4Q8WWR8 484 aaPredicted RBP13.19□□□□□ -0.3
USP28-208ENST00000540438 ITLN2Q8WWU7 325 aaPredicted RBP13.19□□□□□ -0.3
USP28-208ENST00000540438 TRBV9A0A0B4J1U6 114 aa13.19□□□□□ -0.3
USP28-208ENST00000540438 C19orf71A6NCJ1 209 aa13.19□□□□□ -0.3
USP28-208ENST00000540438 FAM231DQ6ZW35 169 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 NIPBLQ6KC79 2804 aaeCLIP13.18□□□□□ -0.3
USP28-208ENST00000540438 NDUFA3O95167 84 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 IGHV3-11P01762 117 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 PRB1P04280 392 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 PVRIGQ6DKI7 326 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 SNAI2O43623 268 aa13.18□□□□□ -0.3
USP28-208ENST00000540438 ZNF80P51504 273 aaPredicted RBP13.18□□□□□ -0.3
USP28-208ENST00000540438 ACANP16112 2415 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 PLP1P60201 277 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 OR10J3Q5JRS4 329 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 NPBQ8NG41 125 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 PRSS22Q9GZN4 317 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 SIRPDQ9H106 197 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 MSRB1Q9NZV6 116 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 TRAV40A0A0B4J280 105 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 RELQ04864 619 aaPredicted RBP13.17□□□□□ -0.3
USP28-208ENST00000540438 RBPMS2Q6ZRY4 209 aaKnown RBP13.17□□□□□ -0.3
USP28-208ENST00000540438 TXN2Q99757 166 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 SMAD5-AS1Q9Y6J3 95 aa13.17□□□□□ -0.3
USP28-208ENST00000540438 M0R1W7 72 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 NCR2O95944 276 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 IGHV4-39P01824 125 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 LMO4P61968 165 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 TEX43Q6ZNM6 134 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 KIR2DL5BA0A0G2JN68 375 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 KIR2DL5BA0A0G2JPC4 375 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 A0A1B0GXF2 115 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 FAM181BA6NEQ2 426 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 KIR2DL5AQ8N109 375 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 AAMDCQ9H7C9 122 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 MTORP42345 2549 aa13.16□□□□□ -0.3
USP28-208ENST00000540438 hDV102S1A0JD36 115 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 PSG3Q16557 428 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 LOXL1Q08397 574 aaPredicted RBP13.15□□□□□ -0.3
USP28-208ENST00000540438 Q6ZN92 141 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 Q6ZS46 218 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 IGHV4-61A0A0C4DH41 118 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 M0R143 59 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 GAS8-AS1O95177 125 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 LYZL1Q6UWQ5 148 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 AMN1Q8IY45 258 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 DEFB104AQ8WTQ1 72 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 AJUBAQ96IF1 538 aa13.15□□□□□ -0.3
USP28-208ENST00000540438 IGHV2-70DA0A0C4DH43 119 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 MRPS12O15235 138 aaKnown RBP13.14□□□□□ -0.31
USP28-208ENST00000540438 TCAPO15273 167 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 TRBV12-3P01733 135 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 EFNA4P52798 201 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 DTX2Q86UW9 622 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 ORM1P02763 201 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 IGHV4-38-2P0DP08 117 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 ESDP10768 282 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 WFDC12Q8WWY7 111 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 NBPF19A0A087WUL8 3843 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 NOTCH2Q04721 2471 aa13.14□□□□□ -0.31
USP28-208ENST00000540438 CENPVL3A0A0U1RRI6 287 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 WI2-2373I1.2A0A1W2PRP0 233 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 SRD5A1P18405 259 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 HINT1P49773 126 aaPredicted RBP13.13□□□□□ -0.31
USP28-208ENST00000540438 CCDC144NLQ6NUI1 221 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 IGHV1-24A0A0C4DH33 117 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 CT45A10P0DMU9 189 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 ZNF25P17030 456 aaPredicted RBP13.13□□□□□ -0.31
USP28-208ENST00000540438 SH2D1AO60880 128 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 HIST2H2BDQ6DRA6 164 aa13.13□□□□□ -0.31
USP28-208ENST00000540438 ZNF469Q96JG9 3925 aaPredicted RBP13.12□□□□□ -0.31
USP28-208ENST00000540438 DNLZQ5SXM8 178 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 LURAP1LQ8IV03 231 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 RNF5Q99942 180 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 MIEN1Q9BRT3 115 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 RABAC1Q9UI14 185 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 TMEM14CQ9P0S9 112 aa13.12□□□□□ -0.31
USP28-208ENST00000540438 LOC102724200A0A096LPH7 203 aaPredicted RBP13.11□□□□□ -0.31
USP28-208ENST00000540438 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.11□□□□□ -0.31
USP28-208ENST00000540438 A0A1B0GUT8 65 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 A1L4Q6 167 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 CSN1S1P47710 185 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 RPL11P62913 178 aaKnown RBP13.11□□□□□ -0.31
USP28-208ENST00000540438 TMEM95Q3KNT9 176 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 TTC9CQ8N5M4 171 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 K7EQM0 130 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 NPFFO15130 113 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 PAX2Q02962 417 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 Q8N6K4 173 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 THYN1Q9P016 225 aa13.11□□□□□ -0.31
USP28-208ENST00000540438 IGHG4P01861 327 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 CCDC140Q96MF4 163 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 C2orf88Q9BSF0 95 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 D6R8Y8 96 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 IGF1P05019 195 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 IGLL1P15814 213 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 IFI27P40305 119 aaPredicted RBP13.1□□□□□ -0.31
USP28-208ENST00000540438 BLCAPP62952 87 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 TMEM189A5PLL7 270 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms