RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RPEQ96AT9 228 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 RITA1Q96K30 269 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 MRPL32Q9BYC8 188 aaKnown RBP7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 FAM234AQ9H0X4 552 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 TRAV4A0A0B4J268 109 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 PAXXQ9BUH6 204 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 FBXL15Q9H469 300 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 NGBQ9NPG2 151 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 EPDR1Q9UM22 224 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 KLF12Q9Y4X4 402 aa7.54□□□□□ -1.2
CTNNA1-243ENST00000540387 A0A1B0GUT8 65 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 SS18L1O75177 396 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 ARMS2P0C7Q2 107 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 FCER1GP30273 86 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 PSMG4Q5JS54 123 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 GTSCR1Q86UQ5 136 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 SPANXA1Q9NS26 97 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 IGHV3-43A0A0B4J1X8 118 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 MBD3L4A6NDZ8 208 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 MBD3L3A6NE82 208 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 MBD3L5A6NJ08 208 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 SNCGO76070 127 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 IGHV3-43DP0DP04 118 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 PSMB2P49721 201 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 ERVK-16P61578 105 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 ALKBH6Q3KRA9 238 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 KLF17Q5JT82 389 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 MAPKAPK5-AS1Q8N8E1 139 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 MBD3L2Q8NHZ7 208 aaPredicted RBP7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 TMEM158Q8WZ71 300 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 HIST1H4GQ99525 98 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 ZMAT4Q9H898 229 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 PCNX1Q96RV3 2341 aa7.53□□□□□ -1.2
CTNNA1-243ENST00000540387 IGSF10Q6WRI0 2623 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 DEFB108AA8MXU0 73 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 CRLF1O75462 422 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 TGFAP01135 160 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 MYCNOSP40205 109 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 PAX8Q06710 450 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 CITED2Q99967 270 aaPredicted RBP7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 FZR1Q9UM11 496 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 A0A096LPE4 126 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 A0A1W2PPZ6 126 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 SHISA9B4DS77 424 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 MYOD1P15172 320 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 EVI2AP22794 236 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 COL8A1P27658 744 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 RIGQ13278 110 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 SLC25A48Q6ZT89 311 aaKnown RBP7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 FXYD5Q96DB9 178 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 ENY2Q9NPA8 101 aa7.52□□□□□ -1.21
CTNNA1-243ENST00000540387 INTS1Q8N201 2190 aaKnown RBP7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 TMSB15BA0A087X1C1 80 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 TMEM30CPA0ZSE6 113 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 D6R8Y8 96 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 PROP1O75360 226 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 PPP1R27Q86WC6 154 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 GATD1Q8NB37 220 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 TMEM126AQ9H061 195 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 TRBV7-3A0A075B6L6 115 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 TRAV25A0A0B4J276 109 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 J3QT63 122 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 HOXA3O43365 443 aaPredicted RBP7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 IL4P05112 153 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 MLANAQ16655 118 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 C3orf56Q8N813 242 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 RASL10AQ92737 203 aa7.51□□□□□ -1.21
CTNNA1-243ENST00000540387 PGPA6NDG6 321 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 OOEPA6NGQ2 149 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 C15orf61A6NNL5 157 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 PSPNO60542 156 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 IGKCP01834 107 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 HLA-DRB4P13762 266 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 ZC2HC1BQ5TFG8 222 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 Q6Q795 121 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 SFTA2Q6UW10 78 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 ZFP2Q6ZN57 461 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 HLA-DRB4X5D2U9 266 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 HSPE1P61604 102 aaKnown RBP7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 CIARTQ8N365 385 aaPredicted RBP7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 ANKRD29Q8N6D5 301 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 RASL11BQ9BPW5 248 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 CFAP46Q8IYW2 2715 aa7.5□□□□□ -1.21
CTNNA1-243ENST00000540387 LOC107984156A0A0G2JMH3 177 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 LYZL6O75951 148 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 IGHV1-2P23083 117 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 Q6ZQT7 251 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 PDPNQ86YL7 162 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 ARL17AQ8IVW1 177 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 RFESDQ8TAC1 157 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 FMC1Q96HJ9 113 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 PROCRQ9UNN8 238 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 A0A0G2JNJ9 132 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 ZNF503-AS2A6NEH8 195 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 SMIM9A6NGZ8 99 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 A8MWV9 139 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 COX7A2P2O60397 106 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 Q6ZT83 130 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 MDFICQ9P1T7 246 aa7.49□□□□□ -1.21
CTNNA1-243ENST00000540387 Q9UFV3 132 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms