RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 HMGB3O15347 200 aaKnown RBP12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 EIF3GO75821 320 aaKnown RBP eCLIP12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 OR10J4P0C629 311 aa12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 UBE2L3P68036 154 aaKnown RBP12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 RNF141Q8WVD5 230 aa12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 SLC50A1Q9BRV3 221 aa12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 C11orf68Q9H3H3 251 aaKnown RBP12.99□□□□□ -0.33
TNFRSF1A-209ENST00000536717 STAG3L2P0CL84 134 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 STAG3L3P0CL85 134 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 DPPA3Q6W0C5 159 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 FXYD5Q96DB9 178 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF586Q9NXT0 402 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 TRBV19A0A075B6N1 114 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 H3BMM0 161 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 H3BTX0 84 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 NBEAP1P0C6P0 100 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ARL14EPLP0DKL9 152 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 RAB5CP51148 216 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 DEFB1P60022 68 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 PDE6HQ13956 83 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 GDF5OSQ5U4N7 250 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 CSNK1G2-AS1Q8NCQ2 148 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 BLNKQ8WV28 456 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF503Q96F45 646 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 PHYHIPLQ96FC7 376 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 LINC00052Q96N35 136 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 PLA2G2EQ9NZK7 142 aa12.98□□□□□ -0.33
TNFRSF1A-209ENST00000536717 NUPR2A6NF83 97 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 DEFB4AO15263 64 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF253O75346 499 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 CXorf1O96002 111 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 HLA-DRB4P13762 266 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF726P1Q15940 193 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 Q8NAQ8 132 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 FAM213BQ8TBF2 198 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF331Q9NQX6 463 aaPredicted RBP12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 CLEC5AQ9NY25 188 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 HLA-DRB4X5D2U9 266 aa12.97□□□□□ -0.33
TNFRSF1A-209ENST00000536717 ZNF705EA8MWA4 302 aaPredicted RBP12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 FHITP49789 147 aa12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 PSG9Q00887 426 aa12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 CEMP1Q6PRD7 247 aaPredicted RBP12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 SSX7Q7RTT5 188 aa12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 SAT2Q96F10 170 aaPredicted RBP12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 X6R8D5 127 aa12.96□□□□□ -0.33
TNFRSF1A-209ENST00000536717 TRAV8-2A0A0B4J237 113 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 MAP1LC3B2A6NCE7 125 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 SLC17A3O00476 420 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 SULT1A2P50226 295 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 MAP1LC3BQ9GZQ8 125 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 KMT2AQ03164 3969 aa12.95□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RGS13O14921 159 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 GCHFRP30047 84 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 IGFL4Q6B9Z1 124 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 IQCF2Q8IXL9 164 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RNF182Q8N6D2 247 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 SAV1Q9H4B6 383 aaPredicted RBP12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 AAMDCQ9H7C9 122 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 TMEM167BQ9NRX6 74 aa12.94□□□□□ -0.34
TNFRSF1A-209ENST00000536717 NDUFB4O95168 129 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RBMY1A1P0DJD3 496 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RBMY1CP0DJD4 496 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 NANOS2P60321 138 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RBMY1FQ15415 496 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 ALKAL2Q6UX46 152 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 FOXI2Q6ZQN5 318 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 ZNF738Q8NE65 137 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 C11orf45Q8TAV5 145 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 SFT2D1Q8WV19 159 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 PHLDA1Q8WV24 401 aaPredicted RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 C20orf173Q96LM9 149 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 IGHV4-28A0A0C4DH34 117 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 H2AFB1P0C5Y9 115 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 MIFP14174 115 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 FGF8P55075 233 aaPredicted RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 NUTF2P61970 127 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 PSG3Q16557 428 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 FAM74A1Q5RGS3 127 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 XCL2Q9UBD3 114 aa12.93□□□□□ -0.34
TNFRSF1A-209ENST00000536717 F6UB75 175 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 HLA-DMBP28068 263 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RANP62826 216 aaKnown RBP12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 IFITM2Q01629 132 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 LYPD1Q8N2G4 141 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 MBD3L1Q8WWY6 194 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 C1QTNF4Q9BXJ3 329 aa12.92□□□□□ -0.34
TNFRSF1A-209ENST00000536717 IGKV3-20P01619 116 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 EBLN2Q6P2I7 272 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 EXOC3-AS1Q8N2X6 119 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 SUN5Q8TC36 379 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 LINC00476Q8WZB0 136 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 CLUHP3Q96NS8 147 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 PRELID1Q9Y255 219 aa12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 KLK5Q9Y337 293 aaPredicted RBP12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 EPPK1P58107 5090 aaKnown RBP12.91□□□□□ -0.34
TNFRSF1A-209ENST00000536717 TEX46H3BTG2 121 aa12.9□□□□□ -0.34
TNFRSF1A-209ENST00000536717 ICAM4Q14773 271 aa12.9□□□□□ -0.34
TNFRSF1A-209ENST00000536717 RPUSD4Q96CM3 377 aaKnown RBP12.9□□□□□ -0.34
TNFRSF1A-209ENST00000536717 MRPL53Q96EL3 112 aaKnown RBP12.9□□□□□ -0.34
TNFRSF1A-209ENST00000536717 Q9H3A6 140 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms