RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LINC00305Q7Z4B0 112 aa7.95□□□□□ -1.14
VPS28-214ENST00000531032 C16orf74Q96GX8 76 aa7.95□□□□□ -1.14
VPS28-214ENST00000531032 LINC01587Q99440 93 aa7.95□□□□□ -1.14
VPS28-214ENST00000531032 LYRM2Q9NU23 88 aaPredicted RBP7.95□□□□□ -1.14
VPS28-214ENST00000531032 PPP1R14DQ9NXH3 145 aa7.95□□□□□ -1.14
VPS28-214ENST00000531032 INMT-MINDY4F8WBC2 141 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 NUDT3O95989 172 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 RLN2P04090 185 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 CDKN1BP46527 198 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 SULT1A1P50225 295 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 TNP2Q05952 138 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 LRRC37A5PQ49AS3 106 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 ZNF493Q6ZR52 646 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 NRARPQ7Z6K4 114 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 BPIFA4PQ86YQ2 179 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 OR1L4Q8NGR5 311 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 RNASE8Q8TDE3 154 aaKnown RBP7.94□□□□□ -1.14
VPS28-214ENST00000531032 RPUSD4Q96CM3 377 aaKnown RBP7.94□□□□□ -1.14
VPS28-214ENST00000531032 MGST2Q99735 147 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 KRTAP4-5Q9BYR2 181 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 ZNF331Q9NQX6 463 aaPredicted RBP7.94□□□□□ -1.14
VPS28-214ENST00000531032 TIMM8BQ9Y5J9 83 aaPredicted RBP7.94□□□□□ -1.14
VPS28-214ENST00000531032 ABCA13Q86UQ4 5058 aa7.94□□□□□ -1.14
VPS28-214ENST00000531032 IGSF23A1L1A6 192 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 FGF7P21781 194 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 S100A11P31949 105 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 CCL18P55774 89 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 C10orf113Q5VZT2 155 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 LCN15Q6UWW0 184 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 C6orf223Q8N319 242 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 TMEM252Q8N6L7 170 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 TMEM263Q8WUH6 116 aaKnown RBP7.93□□□□□ -1.14
VPS28-214ENST00000531032 RNF141Q8WVD5 230 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 PFDN5Q99471 154 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 LINC00588Q9Y4M8 146 aa7.93□□□□□ -1.14
VPS28-214ENST00000531032 H7BYZ3 331 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 SSNA1O43805 119 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 SIX6O95475 246 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 PRB4P10163 310 aaPredicted RBP7.92□□□□□ -1.14
VPS28-214ENST00000531032 HTN1P15515 57 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 MIC13Q5XKP0 118 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 LINC00612Q8N6U2 182 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 C20orf144Q9BQM9 153 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 SLC50A1Q9BRV3 221 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 SLC25A31Q9H0C2 315 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 NOP10Q9NPE3 64 aaKnown RBP7.92□□□□□ -1.14
VPS28-214ENST00000531032 WDR83OSQ9Y284 106 aa7.92□□□□□ -1.14
VPS28-214ENST00000531032 C16orf90A8MZG2 172 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 E5RGE8 158 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 CDK2AP2O75956 126 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 PET100P0DJ07 73 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 CYCSP99999 105 aaKnown RBP7.91□□□□□ -1.14
VPS28-214ENST00000531032 KIR3DS1Q14943 382 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 OPCMLQ14982 345 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 ATP6V1FQ16864 119 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 SSX7Q7RTT5 188 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 OR10J6PQ8NGY7 276 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 NMES1Q9C002 83 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 C11orf1Q9H5F2 150 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 SLC39A9Q9NUM3 307 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 PXMP4Q9Y6I8 212 aa7.91□□□□□ -1.14
VPS28-214ENST00000531032 H3BTX0 84 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 SLC17A3O00476 420 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 MPDU1O75352 247 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 SNRPCP09234 159 aaKnown RBP7.9□□□□□ -1.14
VPS28-214ENST00000531032 IGLC2P0DOY2 106 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 RPL29P47914 159 aaKnown RBP7.9□□□□□ -1.14
VPS28-214ENST00000531032 CLINT1Q14677 625 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 VWC2Q2TAL6 325 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 GFI1BQ5VTD9 330 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 MORN5Q5VZ52 161 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 TMEM37Q8WXS4 190 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 ZNF503Q96F45 646 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 PARD6GQ9BYG4 376 aaPredicted RBP7.9□□□□□ -1.14
VPS28-214ENST00000531032 DNAJC4Q9NNZ3 241 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 KCNIP2Q9NS61 270 aa7.9□□□□□ -1.14
VPS28-214ENST00000531032 HSPG2P98160 4391 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 PRAC2D3DTV9 90 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 M6PRP20645 277 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 IL15RAQ13261 267 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 OR5C1Q8NGR4 320 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 THAP6Q8TBB0 222 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 RXFP4Q8TDU9 374 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 SAT2Q96F10 170 aaPredicted RBP7.89□□□□□ -1.15
VPS28-214ENST00000531032 Q9H8V8 135 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 OR5AC2Q9NZP5 309 aa7.89□□□□□ -1.15
VPS28-214ENST00000531032 TRAV26-1A0A087WT03 109 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 H3BQ15 152 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 HOXA5P20719 270 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 OR5I1Q13606 314 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 GUK1Q16774 197 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 CCDC28AQ8IWP9 274 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 PPP1R1CQ8WVI7 109 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 GNPNAT1Q96EK6 184 aaPredicted RBP7.88□□□□□ -1.15
VPS28-214ENST00000531032 ODF3Q96PU9 254 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 MARVELD1Q9BSK0 173 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 UPK3BQ9BT76 320 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 NPCDR1Q9BY65 106 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 KRTAP1-5Q9BYS1 174 aa7.88□□□□□ -1.15
VPS28-214ENST00000531032 LRP1BQ9NZR2 4599 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms