RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TIMM8BQ9Y5J9 83 aaPredicted RBP15.08■□□□□ 0
VPS28-213ENST00000530983 A0A087X0K7 114 aa15.07■□□□□ 0
VPS28-213ENST00000530983 HSBP1L1C9JCN9 74 aa15.07■□□□□ 0
VPS28-213ENST00000530983 CT45A10P0DMU9 189 aa15.07■□□□□ 0
VPS28-213ENST00000530983 ZNF493Q6ZR52 646 aa15.07■□□□□ 0
VPS28-213ENST00000530983 PMCHL2Q9BQD1 86 aa15.07■□□□□ 0
VPS28-213ENST00000530983 LINC01545Q5VT33 79 aa15.06■□□□□ 0
VPS28-213ENST00000530983 SMIM15Q7Z3B0 74 aa15.06■□□□□ 0
VPS28-213ENST00000530983 M0R1W7 72 aa15.06■□□□□ 0
VPS28-213ENST00000530983 CDSNQ15517 529 aa15.06■□□□□ 0
VPS28-213ENST00000530983 ZNF562Q6V9R5 426 aa15.06■□□□□ 0
VPS28-213ENST00000530983 ARPC1AQ92747 370 aa15.06■□□□□ 0
VPS28-213ENST00000530983 ZNF747Q9BV97 191 aa15.06■□□□□ 0
VPS28-213ENST00000530983 TRAV8-6A0A0B4J262 113 aa15.05■□□□□ 0
VPS28-213ENST00000530983 CD5LO43866 347 aa15.05■□□□□ 0
VPS28-213ENST00000530983 PRTN3P24158 256 aa15.05■□□□□ 0
VPS28-213ENST00000530983 FOXE3Q13461 319 aa15.05■□□□□ 0
VPS28-213ENST00000530983 LYZL1Q6UWQ5 148 aa15.05■□□□□ 0
VPS28-213ENST00000530983 S100A7AQ86SG5 101 aa15.05■□□□□ 0
VPS28-213ENST00000530983 DYNAPQ8N1N2 210 aa15.05■□□□□ -0
VPS28-213ENST00000530983 TTC9CQ8N5M4 171 aa15.05■□□□□ -0
VPS28-213ENST00000530983 C21orf62Q9NYP8 219 aa15.05■□□□□ -0
VPS28-213ENST00000530983 TMSB15BA0A087X1C1 80 aa15.04■□□□□ -0
VPS28-213ENST00000530983 TMEM213A2RRL7 107 aa15.04■□□□□ -0
VPS28-213ENST00000530983 SH2D1AO60880 128 aa15.04■□□□□ -0
VPS28-213ENST00000530983 IGHV3-23P01764 117 aa15.04■□□□□ -0
VPS28-213ENST00000530983 FAM106CPP0CH98 169 aa15.04■□□□□ -0
VPS28-213ENST00000530983 FAM106AQ4KMX7 169 aa15.04■□□□□ -0
VPS28-213ENST00000530983 FA2HQ7L5A8 372 aa15.04■□□□□ -0
VPS28-213ENST00000530983 PRSS3P2Q8NHM4 247 aa15.04■□□□□ -0
VPS28-213ENST00000530983 TIMD4Q96H15 378 aa15.04■□□□□ -0
VPS28-213ENST00000530983 MS4A6AQ9H2W1 248 aa15.04■□□□□ -0
VPS28-213ENST00000530983 IGKV2-40A0A087WW87 121 aaPredicted RBP15.04■□□□□ -0
VPS28-213ENST00000530983 GAGE12BA1L429 117 aa15.04■□□□□ -0
VPS28-213ENST00000530983 IGKV2D-40P01614 121 aaPredicted RBP15.04■□□□□ -0
VPS28-213ENST00000530983 HIST1H1AQ02539 215 aaPredicted RBP15.04■□□□□ -0
VPS28-213ENST00000530983 A0A096LNJ9 63 aa15.03■□□□□ -0
VPS28-213ENST00000530983 SERTM2A0A1B0GWG4 89 aa15.03■□□□□ -0
VPS28-213ENST00000530983 TMEM189A5PLL7 270 aa15.03■□□□□ -0
VPS28-213ENST00000530983 D6R8Y8 96 aa15.03■□□□□ -0
VPS28-213ENST00000530983 IFI27P40305 119 aaPredicted RBP15.03■□□□□ -0
VPS28-213ENST00000530983 CSN1S1P47710 185 aa15.03■□□□□ -0
VPS28-213ENST00000530983 NCBP2LA6PVI3 153 aaKnown RBP15.03■□□□□ -0
VPS28-213ENST00000530983 NCR2O95944 276 aa15.03■□□□□ -0
VPS28-213ENST00000530983 LOXL1Q08397 574 aaPredicted RBP15.03■□□□□ -0
VPS28-213ENST00000530983 OR10AG1Q8NH19 301 aa15.03■□□□□ -0
VPS28-213ENST00000530983 SVEP1Q4LDE5 3571 aa15.02■□□□□ -0
VPS28-213ENST00000530983 SPTA1P02549 2419 aa15.02■□□□□ -0
VPS28-213ENST00000530983 COX8CQ7Z4L0 72 aa15.02■□□□□ -0
VPS28-213ENST00000530983 Q8N6K4 173 aa15.02■□□□□ -0
VPS28-213ENST00000530983 CSTL1Q9H114 145 aa15.02■□□□□ -0
VPS28-213ENST00000530983 CCL21O00585 134 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 GPR183P32249 361 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 FAM104BQ5XKR9 115 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 C2orf91Q6ZV80 131 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 AMN1Q8IY45 258 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 U3KQK5 164 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 RPL7P18124 248 aaKnown RBP15.01□□□□□ -0.01
VPS28-213ENST00000530983 PRR25Q96S07 402 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 SIGLEC8Q9NYZ4 499 aa15.01□□□□□ -0.01
VPS28-213ENST00000530983 CTSGP08311 255 aa15□□□□□ -0.01
VPS28-213ENST00000530983 S100A7P31151 101 aa15□□□□□ -0.01
VPS28-213ENST00000530983 C11orf71Q6IPW1 123 aa15□□□□□ -0.01
VPS28-213ENST00000530983 VMO1Q7Z5L0 202 aa15□□□□□ -0.01
VPS28-213ENST00000530983 THYN1Q9P016 225 aa15□□□□□ -0.01
VPS28-213ENST00000530983 PEF1Q9UBV8 284 aaKnown RBP15□□□□□ -0.01
VPS28-213ENST00000530983 SMAD5-AS1Q9Y6J3 95 aa15□□□□□ -0.01
VPS28-213ENST00000530983 LOC389332A0A1B0GUA5 103 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 SNAI2O43623 268 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 IGHG4P01861 327 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 EGR2P11161 476 aaPredicted RBP14.99□□□□□ -0.01
VPS28-213ENST00000530983 CCDC144NLQ6NUI1 221 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 Q8TAT8 98 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 PRELID3AQ96N28 172 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 MSRB2Q9Y3D2 182 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 K7ERU9 68 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 COX8AP10176 69 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 ZNF80P51504 273 aaPredicted RBP14.99□□□□□ -0.01
VPS28-213ENST00000530983 IGFL4Q6B9Z1 124 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 VGLL1Q99990 258 aa14.99□□□□□ -0.01
VPS28-213ENST00000530983 ASH1LQ9NR48 2969 aaKnown RBP14.99□□□□□ -0.01
VPS28-213ENST00000530983 C7orf71A4D174 169 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 ORMDL3Q8N138 153 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 HLA-DMBP28068 263 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 UCNP55089 124 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 ADORA2A-AS1P86434 159 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 EBI3Q14213 229 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 MRPL51Q4U2R6 128 aaKnown RBP14.98□□□□□ -0.01
VPS28-213ENST00000530983 ZNF575Q86XF7 245 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 PIP4P2Q8N4L2 257 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 RABAC1Q9UI14 185 aa14.98□□□□□ -0.01
VPS28-213ENST00000530983 WNK2Q9Y3S1 2297 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 IGHV7-81A0A0B4J1V7 117 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 NBASA2RRP1 2371 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 IGHV3OR16-8A0A075B7F1 116 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 SAP30O75446 220 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 C1orf122Q6ZSJ8 110 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 MEGF9Q9H1U4 602 aa14.97□□□□□ -0.01
VPS28-213ENST00000530983 TMEM11P17152 192 aa14.96□□□□□ -0.01
VPS28-213ENST00000530983 OR8A1Q8NGG7 326 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms