RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 LTAP01374 205 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 ARL3P36405 182 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 GFI1BQ5VTD9 330 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 FAM231DQ6ZW35 169 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 TMEM190Q8WZ59 177 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 SMIM12Q96EX1 92 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 RPL7P18124 248 aaKnown RBP14.49□□□□□ -0.09
VPS28-207ENST00000526977 PDE6HQ13956 83 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 NUDT10Q8NFP7 164 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 WIPF2Q8TF74 440 aaPredicted RBP14.49□□□□□ -0.09
VPS28-207ENST00000526977 NUDT11Q96G61 164 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 SMAD5-AS1Q9Y6J3 95 aa14.49□□□□□ -0.09
VPS28-207ENST00000526977 IGLV2-11P01706 119 aa14.48□□□□□ -0.09
VPS28-207ENST00000526977 GOLT1AQ6ZVE7 132 aa14.48□□□□□ -0.09
VPS28-207ENST00000526977 OR8I2Q8N0Y5 310 aa14.48□□□□□ -0.09
VPS28-207ENST00000526977 PEF1Q9UBV8 284 aaKnown RBP14.48□□□□□ -0.09
VPS28-207ENST00000526977 TRAV8-1A0A0A6YYK1 113 aa14.48□□□□□ -0.09
VPS28-207ENST00000526977 ZNF705GA8MUZ8 300 aaPredicted RBP14.48□□□□□ -0.09
VPS28-207ENST00000526977 SMIM27A0A1W2PRY6 76 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 CLPSL1A2RUU4 121 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 S100A7P31151 101 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 PRR27Q6MZM9 219 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 HIST3H2BBQ8N257 126 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 WFDC12Q8WWY7 111 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 TRAPPC1Q9Y5R8 145 aa14.47□□□□□ -0.09
VPS28-207ENST00000526977 GATCO43716 136 aaKnown RBP14.46□□□□□ -0.09
VPS28-207ENST00000526977 RNF114Q9Y508 228 aa14.46□□□□□ -0.09
VPS28-207ENST00000526977 BUB3O43684 328 aa14.46□□□□□ -0.1
VPS28-207ENST00000526977 CA1P00915 261 aaPredicted RBP14.46□□□□□ -0.1
VPS28-207ENST00000526977 LGALS1P09382 135 aaKnown RBP14.46□□□□□ -0.1
VPS28-207ENST00000526977 TRBV6-1A0A0K0K1D8 114 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 M0R3E3 92 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 TRBV12-3P01733 135 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 FRMD6-AS1P0C7T7 363 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 SMIM6P0DI80 62 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 LINC00322Q6ZN03 302 aaPredicted RBP14.45□□□□□ -0.1
VPS28-207ENST00000526977 GPR61Q9BZJ8 451 aa14.45□□□□□ -0.1
VPS28-207ENST00000526977 DIRC3C9JPN6 131 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 NDUFA4O00483 81 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 TCL1AP56279 114 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 PSG9Q00887 426 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 TCTEX1D4Q5JR98 221 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 PRNTQ86SH4 94 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 Q86TA4 180 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 TMEM183AQ8IXX5 376 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 AAMDCQ9H7C9 122 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 A0A1B0GUS0 222 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 PRB4P10163 310 aaPredicted RBP14.44□□□□□ -0.1
VPS28-207ENST00000526977 GRAMD2BQ96HH9 432 aa14.44□□□□□ -0.1
VPS28-207ENST00000526977 PROK1P58294 105 aa14.43□□□□□ -0.1
VPS28-207ENST00000526977 PDZD11Q5EBL8 140 aa14.43□□□□□ -0.1
VPS28-207ENST00000526977 COA6Q5JTJ3 125 aaKnown RBP14.43□□□□□ -0.1
VPS28-207ENST00000526977 TMEM75Q8N9X5 138 aa14.43□□□□□ -0.1
VPS28-207ENST00000526977 HAX1O00165 279 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 SPINK4O60575 86 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 APOHP02749 345 aaPredicted RBP14.42□□□□□ -0.1
VPS28-207ENST00000526977 CBLN1P23435 193 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 ZNF492Q9P255 531 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 XKRY2A2RUG3 117 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 C19orf71A6NCJ1 209 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 K7EQM0 130 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 SRSF2Q01130 221 aaKnown RBP14.42□□□□□ -0.1
VPS28-207ENST00000526977 PSG3Q16557 428 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 PSG8Q9UQ74 426 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 U3KQE9 123 aa14.42□□□□□ -0.1
VPS28-207ENST00000526977 IGHV3-66A0A0C4DH42 116 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 ZNF207O43670 478 aaKnown RBP14.41□□□□□ -0.1
VPS28-207ENST00000526977 ZNF253O75346 499 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 FAM106AQ4KMX7 169 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 GPHB5Q86YW7 130 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 C4orf3Q8WVX3 66 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 METTL26Q96S19 204 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 IZUMO1RA6ND01 250 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 ZNF785A8K8V0 405 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 KHDC1LQ5JSQ8 128 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 C1orf194Q5T5A4 169 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 ARL6IP6Q8N6S5 226 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 ZFP30Q9Y2G7 519 aa14.41□□□□□ -0.1
VPS28-207ENST00000526977 S100A2P29034 98 aa14.4□□□□□ -0.1
VPS28-207ENST00000526977 CSN1S1P47710 185 aa14.4□□□□□ -0.1
VPS28-207ENST00000526977 TSKUQ8WUA8 353 aa14.4□□□□□ -0.1
VPS28-207ENST00000526977 GNB1LQ9BYB4 327 aa14.4□□□□□ -0.1
VPS28-207ENST00000526977 ZNF331Q9NQX6 463 aaPredicted RBP14.4□□□□□ -0.1
VPS28-207ENST00000526977 MAST4O15021 2626 aa14.4□□□□□ -0.1
VPS28-207ENST00000526977 IGHV3OR16-13A0A075B7E8 117 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 A0A087X0K7 114 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 IGHV3-74A0A0B4J1X5 117 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 CD28P10747 220 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 RPL19P84098 196 aaKnown RBP14.39□□□□□ -0.11
VPS28-207ENST00000526977 IGFL4Q6B9Z1 124 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 ASCL2Q99929 193 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 MRPL18Q9H0U6 180 aaKnown RBP14.39□□□□□ -0.11
VPS28-207ENST00000526977 NIPBLQ6KC79 2804 aaeCLIP14.39□□□□□ -0.11
VPS28-207ENST00000526977 IGHV3-49A0A0A0MS15 119 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 NUP35Q8NFH5 326 aa14.39□□□□□ -0.11
VPS28-207ENST00000526977 DAZAP1Q96EP5 407 aaKnown RBP14.39□□□□□ -0.11
VPS28-207ENST00000526977 RPP21Q9H633 154 aaKnown RBP14.39□□□□□ -0.11
VPS28-207ENST00000526977 TSSC4Q9Y5U2 329 aaPredicted RBP14.39□□□□□ -0.11
VPS28-207ENST00000526977 PCP4L1A6NKN8 68 aa14.38□□□□□ -0.11
VPS28-207ENST00000526977 P01737 135 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms