RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 IGHV3-64A0A075B6Q5 118 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TRAV41A0A0B4J266 112 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TRGV4A0A0C4DH28 118 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 IRGMA1A4Y4 181 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 FAM92AA1XBS5 289 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 OR4C46A6NHA9 309 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 C3orf84H3BNL1 204 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 H3BQF6 201 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 PGRMC1O00264 195 aaKnown RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 LEPROTO15243 131 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TPST1O60507 370 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 MRPS14O60783 128 aaKnown RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 IFNA4P05014 189 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 MSMBP08118 114 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TRAPPC2P0DI81 140 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TRAPPC2BP0DI82 140 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 CAPZBP47756 277 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 HINT1P49773 126 aaPredicted RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 TPI1P60174 286 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 SS18Q15532 418 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 BRMS1LQ5PSV4 323 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 C9orf64Q5T6V5 341 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 DHRS4L2Q6PKH6 230 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 ZNF720Q7Z2F6 126 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 OOSP2Q86WS3 158 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 OR8B12Q8NGG6 310 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 TMEM203Q969S6 136 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 MAGOHBQ96A72 148 aaKnown RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 TSPAN32Q96QS1 320 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 KLF6Q99612 283 aaPredicted RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 C9orf16Q9BUW7 83 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 C20orf27Q9GZN8 174 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 NMNAT1Q9HAN9 279 aaPredicted RBP1.91□□□□□ -2.1
CD44-223ENST00000526553 IL36BQ9NZH7 164 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 MED11Q9P086 117 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 PKIGQ9Y2B9 76 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 PRELID3BQ9Y3B1 194 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 CCDC168Q8NDH2 2452 aa1.91□□□□□ -2.1
CD44-223ENST00000526553 DOCK4Q8N1I0 1966 aa1.9□□□□□ -2.1
CD44-223ENST00000526553 SPTBP11277 2137 aa1.9□□□□□ -2.1
CD44-223ENST00000526553 TRAV26-2A0A0B4J265 109 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 FNDC10F2Z333 226 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 M0QZK8 103 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 FAAHO00519 579 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 GGCTO75223 188 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 OR2B3O76000 313 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 CNIH1O95406 144 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 DHFRP00374 187 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 IFNA10P01566 189 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 PRM2P04554 102 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SERPINA7P05543 415 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 TSPAN19P0C672 248 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SRP9P49458 86 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 RPL18Q07020 188 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 EIF3IQ13347 325 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 KCNJ8Q15842 424 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 IBA57Q5T440 356 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 RPL22L1Q6P5R6 122 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 IZUMO2Q6UXV1 221 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 OR9Q1Q8NGQ5 310 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 OR13C4Q8NGS5 318 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 TERB2Q8NHR7 220 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 MCFD2Q8NI22 146 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 WFDC5Q8TCV5 224 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 CT55Q8WUE5 264 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SLC7A6Q92536 515 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 HYLS1Q96M11 299 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 IMMP2LQ96T52 175 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 NIPSNAP1Q9BPW8 284 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 AIF1LQ9BQI0 150 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SCN3BQ9NY72 215 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 ERGIC3Q9Y282 383 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SAMHD1Q9Y3Z3 626 aaKnown RBP1.9□□□□□ -2.11
CD44-223ENST00000526553 U3KQA8 63 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 MTORP42345 2549 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 DNHD1Q96M86 4753 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 SPG11Q96JI7 2443 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 CSMD1Q96PZ7 3565 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 CACNA1CQ13936 2221 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 CELSR1Q9NYQ6 3014 aa1.9□□□□□ -2.11
CD44-223ENST00000526553 DOCK10Q96BY6 2186 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 APCP25054 2843 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 ADGRG4Q8IZF6 3080 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIVEP1P15822 2718 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 TRAPPC13A5PLN9 417 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 ZNF878C9JN71 531 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 F8W036 122 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 TSTD3H0UI37 97 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 SULT1C4O75897 302 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 OR7C1O76099 320 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 TNFP01375 233 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 CCL4P13236 92 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 NFYAP23511 347 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BOP23527 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BBP33778 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 RAB5CP51148 216 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BDP58876 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BCP62807 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HBA1P69905 142 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 ERHP84090 104 aaKnown RBP1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms