RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 EXOC3-AS1Q8N2X6 119 aa13.21□□□□□ -0.29
NPHP4-210ENST00000506941 GNPNAT1Q96EK6 184 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-210ENST00000506941 PHYHIPLQ96FC7 376 aa13.21□□□□□ -0.29
NPHP4-210ENST00000506941 RARRES2Q99969 163 aa13.21□□□□□ -0.29
NPHP4-210ENST00000506941 ARPC5LQ9BPX5 153 aa13.21□□□□□ -0.29
NPHP4-210ENST00000506941 A0A0J9YWU9 116 aa13.2□□□□□ -0.3
NPHP4-210ENST00000506941 A0A1W2PPV4 95 aa13.2□□□□□ -0.3
NPHP4-210ENST00000506941 M0R3E3 92 aa13.2□□□□□ -0.3
NPHP4-210ENST00000506941 HMGB3O15347 200 aaKnown RBP13.2□□□□□ -0.3
NPHP4-210ENST00000506941 TAS2R45P59539 299 aa13.2□□□□□ -0.3
NPHP4-210ENST00000506941 UBE2L3P68036 154 aaKnown RBP13.2□□□□□ -0.3
NPHP4-210ENST00000506941 C1QTNF4Q9BXJ3 329 aa13.2□□□□□ -0.3
NPHP4-210ENST00000506941 A0A0D9SG52 128 aa13.19□□□□□ -0.3
NPHP4-210ENST00000506941 ZNF705EA8MWA4 302 aaPredicted RBP13.19□□□□□ -0.3
NPHP4-210ENST00000506941 CDC34P49427 236 aaPredicted RBP13.19□□□□□ -0.3
NPHP4-210ENST00000506941 SSX7Q7RTT5 188 aa13.19□□□□□ -0.3
NPHP4-210ENST00000506941 MRPL53Q96EL3 112 aaKnown RBP13.19□□□□□ -0.3
NPHP4-210ENST00000506941 X6R8D5 127 aa13.19□□□□□ -0.3
NPHP4-210ENST00000506941 M0R2Z0 102 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 BCL2L11O43521 198 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 MBP02144 154 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 CD300CQ08708 224 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 ICAM4Q14773 271 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 SPINK13Q1W4C9 94 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 RAB24Q969Q5 203 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 TENM2Q9NT68 2774 aa13.18□□□□□ -0.3
NPHP4-210ENST00000506941 STAG3L2P0CL84 134 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 STAG3L3P0CL85 134 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 ARL14EPLP0DKL9 152 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 PQLC2Q6ZP29 291 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 TMUB2Q71RG4 321 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 AKAP14Q86UN6 197 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 Q8NAQ8 132 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 MUC7Q8TAX7 377 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 PRELID1Q9Y255 219 aa13.17□□□□□ -0.3
NPHP4-210ENST00000506941 BOLA2-SMG1P6H3BVE0 249 aa13.16□□□□□ -0.3
NPHP4-210ENST00000506941 CRXO43186 299 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-210ENST00000506941 C1QBP02746 253 aa13.16□□□□□ -0.3
NPHP4-210ENST00000506941 ZNF726P1Q15940 193 aa13.16□□□□□ -0.3
NPHP4-210ENST00000506941 ZNF705AQ6ZN79 300 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-210ENST00000506941 OR10J6PQ8NGY7 276 aa13.16□□□□□ -0.3
NPHP4-210ENST00000506941 AAMDCQ9H7C9 122 aa13.16□□□□□ -0.3
NPHP4-210ENST00000506941 KANTRA0A1W2PQU2 76 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 NPIPB6E9PJ23 425 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 DEFB4AO15263 64 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 RANP62826 216 aaKnown RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 LGALSLQ3ZCW2 172 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 BAP18Q8IXM2 172 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 C1orf158Q8N1D5 194 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 ZNF471Q9BX82 626 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 ACTR3CQ9C0K3 210 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 Q9H3A6 140 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 C11orf68Q9H3H3 251 aaKnown RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 PLA2G2EQ9NZK7 142 aa13.15□□□□□ -0.3
NPHP4-210ENST00000506941 DYNC2H1Q8NCM8 4307 aaKnown RBP13.15□□□□□ -0.3
NPHP4-210ENST00000506941 TRAV12-2A0A075B6T6 113 aa13.14□□□□□ -0.31
NPHP4-210ENST00000506941 IGHV4-28A0A0C4DH34 117 aa13.14□□□□□ -0.31
NPHP4-210ENST00000506941 LYPD1Q8N2G4 141 aa13.14□□□□□ -0.31
NPHP4-210ENST00000506941 IGF2BP2-AS1Q96M15 143 aa13.14□□□□□ -0.31
NPHP4-210ENST00000506941 IGHV3OR16-12A0A075B7B8 117 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 IGKV2-40A0A087WW87 121 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-210ENST00000506941 PFDN1O60925 122 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 IGKV2D-40P01614 121 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-210ENST00000506941 AMBPP02760 352 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 RBMY1A1P0DJD3 496 aaKnown RBP13.13□□□□□ -0.31
NPHP4-210ENST00000506941 RBMY1CP0DJD4 496 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 CT45A10P0DMU9 189 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 MIFP14174 115 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 GCHFRP30047 84 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 ERCC8Q13216 396 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 KIR3DS1Q14943 382 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 RBMY1FQ15415 496 aaKnown RBP13.13□□□□□ -0.31
NPHP4-210ENST00000506941 AKR1C8PQ5T2L2 129 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 IL17DQ8TAD2 202 aa13.13□□□□□ -0.31
NPHP4-210ENST00000506941 CTXND1A0A1B0GTU2 59 aa13.12□□□□□ -0.31
NPHP4-210ENST00000506941 SUN5Q8TC36 379 aa13.12□□□□□ -0.31
NPHP4-210ENST00000506941 PPP1R14DQ9NXH3 145 aa13.12□□□□□ -0.31
NPHP4-210ENST00000506941 C3orf84H3BNL1 204 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 CXorf1O96002 111 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 INSP01308 110 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 ZFAND6Q6FIF0 208 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 HYLS1Q96M11 299 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 NEU1Q99519 415 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 VGLL1Q99990 258 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 AGPAT4-IT1Q9H0P7 198 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 OTORQ9NRC9 128 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 GOLT1BQ9Y3E0 138 aa13.11□□□□□ -0.31
NPHP4-210ENST00000506941 SEC11BP0C7V7 166 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 CDKN1BP46527 198 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 FHITP49789 147 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 CASC10Q5T4H9 136 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 C9orf47Q6ZRZ4 202 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 STOML3Q8TAV4 291 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 ODF3Q96PU9 254 aa13.1□□□□□ -0.31
NPHP4-210ENST00000506941 PGPA6NDG6 321 aa13.09□□□□□ -0.31
NPHP4-210ENST00000506941 FAM19A4Q96LR4 140 aa13.09□□□□□ -0.31
NPHP4-210ENST00000506941 TMPRSS5Q9H3S3 457 aa13.09□□□□□ -0.31
NPHP4-210ENST00000506941 DIRC3C9JPN6 131 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 PRM2P04554 102 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 TPT1P13693 172 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms