RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 IGF2BP2-AS1Q96M15 143 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 PSMB11A5LHX3 300 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 HOXB4P17483 251 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 GATA3P23771 443 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 PRR25Q96S07 402 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 ZNF256Q9Y2P7 627 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 DIDO1Q9BTC0 2240 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 DLEU1O43261 78 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 RUSC1-AS1Q66K80 236 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 DMRTC2Q8IXT2 367 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 MRPL16Q9NX20 251 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 SMAD7O15105 426 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 SRD5A1P18405 259 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 BRWD1-AS2P59051 145 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 TEX43Q6ZNM6 134 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 LINC01587Q99440 93 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 DAZ1Q9NQZ3 744 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 TMEM213A2RRL7 107 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 H3BUT2 72 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 KLF5Q13887 457 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 PCNX2A6NKB5 2137 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 H7C2G1 150 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 MSMBP08118 114 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 GP9P14770 177 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 IL17RELQ6ZVW7 336 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 LINC01356Q8N9X3 169 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 RHPN1-AS1Q9BWJ2 59 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 JKAMPQ9P055 326 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 I3L2K1 104 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 CGB3P0DN86 165 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 CGB7P0DN87 165 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 RNF182Q8N6D2 247 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 RITA1Q96K30 269 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 IGHV1-24A0A0C4DH33 117 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 PLNP26678 52 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 OR2K2Q8NGT1 345 aa8.53□□□□□ -1.04
LIMCH1-205ENST00000503057 SMKR1H3BMG3 65 aa8.52□□□□□ -1.04
LIMCH1-205ENST00000503057 FREM1Q5H8C1 2179 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 TMEM8BA6NDV4 472 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 G3V318 75 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 TNFRSF6BO95407 300 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 GRNP28799 593 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 PATE2Q6UY27 113 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 FAM167A-AS1Q96KT0 104 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 PRSS2P07478 247 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 RCHY1Q96PM5 261 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 TMEM158Q8WZ71 300 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 SNHG12Q9BXW3 62 aa8.52□□□□□ -1.05
LIMCH1-205ENST00000503057 FXYD7P58549 80 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 OR5A1Q8NGJ0 315 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 MRAP2Q96G30 205 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 C8orf86Q6ZUL3 223 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 H3BRM9 83 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 NDUFA4O00483 81 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 IGLC2P0DOY2 106 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 IGLC3P0DOY3 106 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 ZNF124Q15973 351 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 C21orf62-AS1Q17RA5 79 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 MORN5Q5VZ52 161 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 MPV17L2Q567V2 206 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 VCX2Q9H322 139 aa8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 NHP2Q9NX24 153 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-205ENST00000503057 IGKV1OR2-108A0A075B7D4 117 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 PROP1O75360 226 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 FAM120AOSQ5T036 256 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 DOCK10Q96BY6 2186 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 COL4A2P08572 1712 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 MRPL51Q4U2R6 128 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 GTSCR1Q86UQ5 136 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 ATG2AQ2TAZ0 1938 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 IGLV1-47P01700 117 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 ASPHD1Q5U4P2 390 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 CDPF1Q6NVV7 123 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 STHQ8IWL8 128 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 K7EIM0 57 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 FCN3O75636 299 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 TMEM101Q96IK0 257 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 OVOL3O00110 214 aa8.5□□□□□ -1.05
LIMCH1-205ENST00000503057 A0A087X0K7 114 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 WFDC12Q8WWY7 111 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 C17orf77Q96MU5 243 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 TRAV12-3A0A0B4J271 114 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 C14orf178Q8N769 122 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 Q8N8P6 123 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 ZNF815PA8K554 130 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 TEX22C9J3V5 150 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 VCYO14598 125 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 ZNF688P0C7X2 276 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 GTF3C1Q12789 2109 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 IGLV11-55A0A075B6I3 123 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 RBAKDNA6NC62 111 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 H3BUA1 57 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 PF4P02776 101 aa8.49□□□□□ -1.05
LIMCH1-205ENST00000503057 ACACAQ13085 2346 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 FBXL19-AS1Q494R0 122 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 PIP4P2Q8N4L2 257 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 SPOCK3Q9BQ16 436 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 EXPH5Q8NEV8 1989 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 MED13Q9UHV7 2174 aa8.48□□□□□ -1.05
LIMCH1-205ENST00000503057 SUMO2P61956 95 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms