RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PHLDA1Q8WV24 401 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-215ENST00000496447 JPT2Q9H910 190 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 LSM4Q9Y4Z0 139 aaKnown RBP10.6□□□□□ -0.71
PTPRF-215ENST00000496447 C1orf122Q6ZSJ8 110 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 C14orf178Q8N769 122 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-215ENST00000496447 ERCC8Q13216 396 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 MLANAQ16655 118 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 SFTA2Q6UW10 78 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 C1orf159Q96HA4 380 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 HS3ST6Q96QI5 342 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 KIR2DL5BA0A0G2JN68 375 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 KIR2DL5BA0A0G2JPC4 375 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 VCYO14598 125 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 Q6ZR03 302 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 KIR2DL5AQ8N109 375 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 SHANK2-AS3Q9BTD1 123 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 XCL2Q9UBD3 114 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 PLXNA3P51805 1871 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 TRAV8-1A0A0A6YYK1 113 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 ETV2O00321 342 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-215ENST00000496447 CSTL1Q9H114 145 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 FAM215AQ9Y5M1 114 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 FER1L5A0AVI2 2057 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 F8W1H4 67 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 G3V318 75 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 SPANXDQ9BXN6 97 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 MGAMO43451 1857 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 IL17RELQ6ZVW7 336 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 Q6ZWC4 215 aa10.59□□□□□ -0.71
PTPRF-215ENST00000496447 GAGE12HA6NDE8 117 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 E9PQ18 207 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 AZU1P20160 251 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 A0A087WWL8 130 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 NDUFB8O95169 186 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 PRR31Q5SQ13 230 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 RASL10AQ92737 203 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 SIP14410 1827 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 LOXP28300 417 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-215ENST00000496447 DAD1P61803 113 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 DMRTC2Q8IXT2 367 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-215ENST00000496447 MCRIP2Q9BUT9 160 aaKnown RBP10.58□□□□□ -0.72
PTPRF-215ENST00000496447 KLF12Q9Y4X4 402 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 STPG4Q8N801 248 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 ERG28Q9UKR5 140 aa10.58□□□□□ -0.72
PTPRF-215ENST00000496447 A0A0G2JRQ6 117 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 F5H768 121 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 ATXN8Q156A1 80 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 FNDC10F2Z333 226 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 PAX4O43316 350 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 LMO1P25800 156 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 C6orf226Q5I0X4 101 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 DUX4L9Q6RFH8 374 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-215ENST00000496447 FHL1Q13642 323 aa10.57□□□□□ -0.72
PTPRF-215ENST00000496447 CFPP27918 469 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 USF3Q68DE3 2245 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 DOCK8Q8NF50 2099 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 ZNF833PQ6ZTB9 187 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 TCF15Q12870 199 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 PDE6HQ13956 83 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 SS18Q15532 418 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 NPC2P61916 151 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 RLFQ13129 1914 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 NBASA2RRP1 2371 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 TRAV13-1A0A0B4J241 112 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 GGTLC3B5MD39 225 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 YPEL3P61236 119 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-215ENST00000496447 CHAC1Q9BUX1 264 aa10.56□□□□□ -0.72
PTPRF-215ENST00000496447 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-215ENST00000496447 DKK1O94907 266 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 CDPF1Q6NVV7 123 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 Q6ZRM9 215 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 PLEKHB2Q96CS7 222 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 TNFRSF6BO95407 300 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 IGLV1-44P01699 117 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 TEX36Q5VZQ5 186 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 M0R2P5 195 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 CFHR3Q02985 330 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 APOC4P55056 127 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 SPINK13Q1W4C9 94 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 C9orf153Q5TBE3 101 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 Q86TA4 180 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 IGLV3-9A0A075B6K5 115 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 NUP35Q8NFH5 326 aa10.55□□□□□ -0.72
PTPRF-215ENST00000496447 PKDREJQ9NTG1 2253 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 IGKV1-6A0A0C4DH72 117 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 ZNF503-AS2A6NEH8 195 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 CCL25O15444 150 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 C17orf58Q2M2W7 97 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 TCTEX1D4Q5JR98 221 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 SPANXCQ9NY87 97 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 PPDPFLQ8WWR9 84 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 KNCNA6PVL3 124 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 NDUFA4L2Q9NRX3 87 aa10.54□□□□□ -0.72
PTPRF-215ENST00000496447 WDR86Q86TI4 376 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 GATD1Q8NB37 220 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 ARMS2P0C7Q2 107 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 LIME1Q9H400 295 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 TMEM14BQ9NUH8 114 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 COA6Q5JTJ3 125 aaKnown RBP10.53□□□□□ -0.72
PTPRF-215ENST00000496447 MPDZO75970 2070 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms