RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 SAT2Q96F10 170 aaPredicted RBP11.19□□□□□ -0.62
HDAC4-213ENST00000496347 C20orf144Q9BQM9 153 aa11.19□□□□□ -0.62
HDAC4-213ENST00000496347 TMEM14CQ9P0S9 112 aa11.19□□□□□ -0.62
HDAC4-213ENST00000496347 DAD1P61803 113 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 PDE6HQ13956 83 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 LRRC37A5PQ49AS3 106 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 OR5C1Q8NGR4 320 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 MRPL53Q96EL3 112 aaKnown RBP11.18□□□□□ -0.62
HDAC4-213ENST00000496347 C16orf74Q96GX8 76 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 ODF3Q96PU9 254 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 BATF3Q9NR55 127 aa11.18□□□□□ -0.62
HDAC4-213ENST00000496347 ZNF705GA8MUZ8 300 aaPredicted RBP11.17□□□□□ -0.62
HDAC4-213ENST00000496347 H3BTX0 84 aa11.17□□□□□ -0.62
HDAC4-213ENST00000496347 SIX6O95475 246 aa11.17□□□□□ -0.62
HDAC4-213ENST00000496347 H2BFSP57053 126 aa11.17□□□□□ -0.62
HDAC4-213ENST00000496347 THAP6Q8TBB0 222 aa11.17□□□□□ -0.62
HDAC4-213ENST00000496347 OR5AC2Q9NZP5 309 aa11.17□□□□□ -0.62
HDAC4-213ENST00000496347 TRBV19A0A075B6N1 114 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 TRAV5A0A0B4J249 113 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 PLAC8L1A1L4L8 177 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 H7BYZ3 331 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 SNRPCP09234 159 aaKnown RBP11.16□□□□□ -0.62
HDAC4-213ENST00000496347 POM121L12Q8N7R1 296 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 PPP1R1CQ8WVI7 109 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 LINC01587Q99440 93 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 ZNF586Q9NXT0 402 aa11.16□□□□□ -0.62
HDAC4-213ENST00000496347 NPIPB6E9PJ23 425 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 SSNA1O43805 119 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 HTN3P15516 51 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 NHLH2Q02577 135 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 CLINT1Q14677 625 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 ZNF493Q6ZR52 646 aa11.15□□□□□ -0.62
HDAC4-213ENST00000496347 RNASE8Q8TDE3 154 aaKnown RBP11.15□□□□□ -0.62
HDAC4-213ENST00000496347 TMEM263Q8WUH6 116 aaKnown RBP11.15□□□□□ -0.62
HDAC4-213ENST00000496347 PRAC2D3DTV9 90 aa11.14□□□□□ -0.63
HDAC4-213ENST00000496347 H0YIZ8 118 aa11.14□□□□□ -0.63
HDAC4-213ENST00000496347 HIST1H1EP10412 219 aaKnown RBP11.14□□□□□ -0.63
HDAC4-213ENST00000496347 LEPP41159 167 aa11.14□□□□□ -0.63
HDAC4-213ENST00000496347 GFI1BQ5VTD9 330 aa11.14□□□□□ -0.63
HDAC4-213ENST00000496347 MRPL32Q9BYC8 188 aaKnown RBP11.14□□□□□ -0.63
HDAC4-213ENST00000496347 WDR61Q9GZS3 305 aaKnown RBP11.14□□□□□ -0.63
HDAC4-213ENST00000496347 PRELID1Q9Y255 219 aa11.14□□□□□ -0.63
HDAC4-213ENST00000496347 GCSAMLQ5JQS6 135 aa11.13□□□□□ -0.63
HDAC4-213ENST00000496347 TMEM88Q6PEY1 159 aa11.13□□□□□ -0.63
HDAC4-213ENST00000496347 C15orf53Q8NAA6 179 aa11.13□□□□□ -0.63
HDAC4-213ENST00000496347 ATP5SQ99766 215 aa11.13□□□□□ -0.63
HDAC4-213ENST00000496347 SLC25A2Q9BXI2 301 aa11.13□□□□□ -0.63
HDAC4-213ENST00000496347 C17orf112F2Z3M2 114 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 NDUFB4O95168 129 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 MPC2O95563 127 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 PRM2P04554 102 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 PYYP10082 97 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 PRB4P10163 310 aaPredicted RBP11.12□□□□□ -0.63
HDAC4-213ENST00000496347 AZU1P20160 251 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 AAMDCQ9H7C9 122 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 PLA2G2EQ9NZK7 142 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 HSPB11Q9Y547 144 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 TIMM9Q9Y5J7 89 aa11.12□□□□□ -0.63
HDAC4-213ENST00000496347 TIMM8BQ9Y5J9 83 aaPredicted RBP11.12□□□□□ -0.63
HDAC4-213ENST00000496347 CT45A10P0DMU9 189 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 DEFB130BP0DP73 79 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 DEFB130AP0DP74 79 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 UBE2DNLQ8IWF7 75 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 FAM167A-AS1Q96KT0 104 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 PARD6GQ9BYG4 376 aaPredicted RBP11.11□□□□□ -0.63
HDAC4-213ENST00000496347 NACAE9PAV3 2078 aa11.11□□□□□ -0.63
HDAC4-213ENST00000496347 M0R3E3 92 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 ATP5G1P05496 136 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 HTN1P15515 57 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 ATP5G3P48201 142 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 RNF212Q495C1 297 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 MIR17HGQ75NE6 70 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 BLNKQ8WV28 456 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 MBD2Q9UBB5 411 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 FUT9Q9Y231 359 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 FAT2Q9NYQ8 4349 aa11.1□□□□□ -0.63
HDAC4-213ENST00000496347 DNAH2Q9P225 4427 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 PTTG1O95997 202 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 SLC25A5P05141 298 aaKnown RBP11.09□□□□□ -0.63
HDAC4-213ENST00000496347 KIR3DS1Q14943 382 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 LINC00336Q6ZUF6 198 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 CCDC28AQ8IWP9 274 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 PYGO2Q9BRQ0 406 aa11.09□□□□□ -0.63
HDAC4-213ENST00000496347 PKHD1P08F94 4074 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 CBY3A6NI87 242 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 KLLNB2CW77 178 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 FAM3BP58499 235 aaPredicted RBP11.08□□□□□ -0.64
HDAC4-213ENST00000496347 EXOC3-AS1Q8N2X6 119 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 LINC00612Q8N6U2 182 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 FXYD5Q96DB9 178 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 LINC00477Q96M19 166 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 PAXXQ9BUH6 204 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 OR51M1Q9H341 326 aa11.08□□□□□ -0.64
HDAC4-213ENST00000496347 NOP10Q9NPE3 64 aaKnown RBP11.08□□□□□ -0.64
HDAC4-213ENST00000496347 TRAV12-3A0A0B4J271 114 aa11.07□□□□□ -0.64
HDAC4-213ENST00000496347 C7orf71A4D174 169 aa11.07□□□□□ -0.64
HDAC4-213ENST00000496347 IFNA5P01569 189 aa11.07□□□□□ -0.64
HDAC4-213ENST00000496347 NMBP08949 121 aa11.07□□□□□ -0.64
HDAC4-213ENST00000496347 NBEAP1P0C6P0 100 aa11.07□□□□□ -0.64
HDAC4-213ENST00000496347 CRISP2P16562 243 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms