RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 SELENOKQ9Y6D0 94 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 TRAV34A0A0B4J273 112 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 DIRC3C9JPN6 131 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 SOCS3O14543 225 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 CSN3P07498 182 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 UBE2G1P62253 170 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 RPL23P62829 140 aaKnown RBP16.37■□□□□ 0.21
SMC4-221ENST00000489573 ADIRFQ15847 76 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 TMEM183BQ1AE95 376 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 IGF2BP2-AS1Q96M15 143 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 MLXQ9UH92 298 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 KLF12Q9Y4X4 402 aa16.37■□□□□ 0.21
SMC4-221ENST00000489573 IGKV3-7A0A075B6H7 116 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 SCO1O75880 301 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 S100A9P06702 114 aaKnown RBP16.36■□□□□ 0.21
SMC4-221ENST00000489573 GNG4P50150 75 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 RNF182Q8N6D2 247 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 MRPL53Q96EL3 112 aaKnown RBP16.36■□□□□ 0.21
SMC4-221ENST00000489573 FMC1Q96HJ9 113 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 LY96Q9Y6Y9 160 aa16.36■□□□□ 0.21
SMC4-221ENST00000489573 SERTM2A0A1B0GWG4 89 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 K7EQM0 130 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 ISLRO14498 428 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 OVOL1O14753 267 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 RHEBQ15382 184 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 SAMD13Q5VXD3 122 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 LINC01551Q86U37 167 aa16.35■□□□□ 0.21
SMC4-221ENST00000489573 PGPEP1LA6NFU8 196 aa16.34■□□□□ 0.21
SMC4-221ENST00000489573 LCN12Q6JVE5 192 aa16.34■□□□□ 0.21
SMC4-221ENST00000489573 C7orf77A4D0Y5 90 aa16.34■□□□□ 0.21
SMC4-221ENST00000489573 TMEM75Q8N9X5 138 aa16.34■□□□□ 0.21
SMC4-221ENST00000489573 SGK494Q96LW2 274 aa16.34■□□□□ 0.21
SMC4-221ENST00000489573 DNHD1Q96M86 4753 aa16.33■□□□□ 0.21
SMC4-221ENST00000489573 ZNF705FA8MVS1 300 aaPredicted RBP16.33■□□□□ 0.2
SMC4-221ENST00000489573 B4DEV8 164 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 PSG3Q16557 428 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 KRTAP24-1Q3LI83 254 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 OCC1Q8TAD7 63 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 DYNLRB2Q8TF09 96 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 MS4A6AQ9H2W1 248 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 RPS10P5Q9NQ39 176 aa16.33■□□□□ 0.2
SMC4-221ENST00000489573 TRAV8-1A0A0A6YYK1 113 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 TRBV6-1A0A0K0K1D8 114 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 PRB4P10163 310 aaPredicted RBP16.32■□□□□ 0.2
SMC4-221ENST00000489573 Q86TA4 180 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 BAGE2Q86Y30 109 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 GBGT1Q8N5D6 347 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 DCANP1Q8TF63 244 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 CITED1Q99966 193 aa16.32■□□□□ 0.2
SMC4-221ENST00000489573 AURKAIP1Q9NWT8 199 aaPredicted RBP16.32■□□□□ 0.2
SMC4-221ENST00000489573 IGKV2-40A0A087WW87 121 aaPredicted RBP16.31■□□□□ 0.2
SMC4-221ENST00000489573 IGKV2D-40P01614 121 aaPredicted RBP16.31■□□□□ 0.2
SMC4-221ENST00000489573 IGLV2-11P01706 119 aa16.31■□□□□ 0.2
SMC4-221ENST00000489573 C20orf173Q96LM9 149 aa16.31■□□□□ 0.2
SMC4-221ENST00000489573 LTAP01374 205 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 IGLV2-8P01709 118 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 ID1P41134 155 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 FLI1Q01543 452 aaPredicted RBP16.3■□□□□ 0.2
SMC4-221ENST00000489573 WFDC3Q8IUB2 231 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 ISOC2Q96AB3 205 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 SIGLEC8Q9NYZ4 499 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 FBLL1A6NHQ2 334 aaKnown RBP16.3■□□□□ 0.2
SMC4-221ENST00000489573 DNASE2O00115 360 aaPredicted RBP16.3■□□□□ 0.2
SMC4-221ENST00000489573 PRNTQ86SH4 94 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 PRIMA1Q86XR5 153 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 ZNF738Q8NE65 137 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 SMIM12Q96EX1 92 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 PSG8Q9UQ74 426 aa16.3■□□□□ 0.2
SMC4-221ENST00000489573 RBAKDNA6NC62 111 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 PRAC2D3DTV9 90 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 K7EN84 100 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 PF4P02776 101 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 TFPI2P48307 235 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 PAFAH1B2P68402 229 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 NHLRC2Q8NBF2 726 aa16.29■□□□□ 0.2
SMC4-221ENST00000489573 A0A087WWC5 75 aa16.28■□□□□ 0.2
SMC4-221ENST00000489573 K7EQG2 157 aa16.28■□□□□ 0.2
SMC4-221ENST00000489573 DEFB114Q30KQ6 69 aa16.28■□□□□ 0.2
SMC4-221ENST00000489573 RBPMS2Q6ZRY4 209 aaKnown RBP16.28■□□□□ 0.2
SMC4-221ENST00000489573 TSPAN4O14817 238 aa16.27■□□□□ 0.2
SMC4-221ENST00000489573 MT-ND4LP03901 98 aa16.27■□□□□ 0.2
SMC4-221ENST00000489573 MGST1P10620 155 aaKnown RBP16.27■□□□□ 0.2
SMC4-221ENST00000489573 RNF212Q495C1 297 aa16.27■□□□□ 0.2
SMC4-221ENST00000489573 TMEM61Q8N0U2 210 aa16.27■□□□□ 0.2
SMC4-221ENST00000489573 JMJD1CQ15652 2540 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 GCGP01275 180 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 VGLL1Q99990 258 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 ZFP30Q9Y2G7 519 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 TRAV2A0A0B4J234 112 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 SNRPD3P62318 126 aaKnown RBP16.26■□□□□ 0.19
SMC4-221ENST00000489573 BTN1A1Q13410 526 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 OR5I1Q13606 314 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 TMEM183AQ8IXX5 376 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 MLST8Q9BVC4 326 aa16.26■□□□□ 0.19
SMC4-221ENST00000489573 CD300EQ496F6 205 aaPredicted RBP16.25■□□□□ 0.19
SMC4-221ENST00000489573 TMEM88Q6PEY1 159 aa16.25■□□□□ 0.19
SMC4-221ENST00000489573 CBLN2Q8IUK8 224 aa16.25■□□□□ 0.19
SMC4-221ENST00000489573 FAM24BQ8N5W8 94 aa16.25■□□□□ 0.19
SMC4-221ENST00000489573 LINC00482Q8N8I6 264 aa16.25■□□□□ 0.19
SMC4-221ENST00000489573 SFRP2Q96HF1 295 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms