RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 FAM3BP58499 235 aaPredicted RBP15.91■□□□□ 0.14
PTPN4-211ENST00000488279 VWC2Q2TAL6 325 aa15.91■□□□□ 0.14
PTPN4-211ENST00000488279 SAT2Q96F10 170 aaPredicted RBP15.91■□□□□ 0.14
PTPN4-211ENST00000488279 ATG101Q9BSB4 218 aa15.91■□□□□ 0.14
PTPN4-211ENST00000488279 LYRM2Q9NU23 88 aaPredicted RBP15.91■□□□□ 0.14
PTPN4-211ENST00000488279 PKHD1P08F94 4074 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 TRAV5A0A0B4J249 113 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 PRAC2D3DTV9 90 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 RPL29P47914 159 aaKnown RBP15.9■□□□□ 0.14
PTPN4-211ENST00000488279 HBG1P69891 147 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 HBG2P69892 147 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 SOHLH1Q5JUK2 328 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 STX12Q86Y82 276 aa15.9■□□□□ 0.14
PTPN4-211ENST00000488279 BAXQ07812 192 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 IL15RAQ13261 267 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 RAB32Q13637 225 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 KIR3DS1Q14943 382 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 MZT2BQ6NZ67 158 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 CCDC28AQ8IWP9 274 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 TMEM252Q8N6L7 170 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 RNASE8Q8TDE3 154 aaKnown RBP15.89■□□□□ 0.13
PTPN4-211ENST00000488279 TMEM263Q8WUH6 116 aaKnown RBP15.89■□□□□ 0.13
PTPN4-211ENST00000488279 NOP10Q9NPE3 64 aaKnown RBP15.89■□□□□ 0.13
PTPN4-211ENST00000488279 SLC39A9Q9NUM3 307 aa15.89■□□□□ 0.13
PTPN4-211ENST00000488279 KIAA1109Q2LD37 5005 aa15.88■□□□□ 0.13
PTPN4-211ENST00000488279 UBE2L5PA0A1B0GUS4 154 aa15.88■□□□□ 0.13
PTPN4-211ENST00000488279 ATP6V1FQ16864 119 aa15.88■□□□□ 0.13
PTPN4-211ENST00000488279 LINC00299Q6ZSB3 139 aa15.88■□□□□ 0.13
PTPN4-211ENST00000488279 PARD6GQ9BYG4 376 aaPredicted RBP15.88■□□□□ 0.13
PTPN4-211ENST00000488279 IGSF23A1L1A6 192 aa15.87■□□□□ 0.13
PTPN4-211ENST00000488279 NUDT3O95989 172 aa15.87■□□□□ 0.13
PTPN4-211ENST00000488279 GFI1BQ5VTD9 330 aa15.87■□□□□ 0.13
PTPN4-211ENST00000488279 CHAC2Q8WUX2 184 aa15.87■□□□□ 0.13
PTPN4-211ENST00000488279 CT45A10P0DMU9 189 aa15.86■□□□□ 0.13
PTPN4-211ENST00000488279 FGF7P21781 194 aa15.86■□□□□ 0.13
PTPN4-211ENST00000488279 C1orf134Q5TEV5 83 aa15.86■□□□□ 0.13
PTPN4-211ENST00000488279 ZNF586Q9NXT0 402 aa15.86■□□□□ 0.13
PTPN4-211ENST00000488279 ZNF253O75346 499 aa15.85■□□□□ 0.13
PTPN4-211ENST00000488279 LEPP41159 167 aa15.85■□□□□ 0.13
PTPN4-211ENST00000488279 S100ZQ8WXG8 99 aa15.85■□□□□ 0.13
PTPN4-211ENST00000488279 ODF3Q96PU9 254 aa15.85■□□□□ 0.13
PTPN4-211ENST00000488279 KRTAP17-1Q9BYP8 105 aa15.85■□□□□ 0.13
PTPN4-211ENST00000488279 PKD1P98161 4303 aa15.84■□□□□ 0.13
PTPN4-211ENST00000488279 MPDU1O75352 247 aa15.84■□□□□ 0.13
PTPN4-211ENST00000488279 GPN1Q9HCN4 374 aaPredicted RBP15.84■□□□□ 0.13
PTPN4-211ENST00000488279 TRBV19A0A075B6N1 114 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 NPIPB6E9PJ23 425 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 J3KRW8 73 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 CCL18P55774 89 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 ASAH1Q13510 395 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 MRPL53Q96EL3 112 aaKnown RBP15.83■□□□□ 0.12
PTPN4-211ENST00000488279 TMEM14CQ9P0S9 112 aa15.83■□□□□ 0.12
PTPN4-211ENST00000488279 TRAV12-3A0A0B4J271 114 aa15.82■□□□□ 0.12
PTPN4-211ENST00000488279 TIMM9Q9Y5J7 89 aa15.82■□□□□ 0.12
PTPN4-211ENST00000488279 SNURFLB1AK76 121 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 RLN2P04090 185 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 MED14OSP0DP75 135 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 HIST1H1EP10412 219 aaKnown RBP15.81■□□□□ 0.12
PTPN4-211ENST00000488279 OR5I1Q13606 314 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 RNF141Q8WVD5 230 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 PYGO2Q9BRQ0 406 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 NPCDR1Q9BY65 106 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 PRELID1Q9Y255 219 aa15.81■□□□□ 0.12
PTPN4-211ENST00000488279 PDE6HQ13956 83 aa15.8■□□□□ 0.12
PTPN4-211ENST00000488279 CLINT1Q14677 625 aa15.8■□□□□ 0.12
PTPN4-211ENST00000488279 LINC00612Q8N6U2 182 aa15.8■□□□□ 0.12
PTPN4-211ENST00000488279 ZNRF2Q8NHG8 242 aa15.8■□□□□ 0.12
PTPN4-211ENST00000488279 ENKURQ8TC29 256 aa15.8■□□□□ 0.12
PTPN4-211ENST00000488279 M0R3E3 92 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 SLC25A5P05141 298 aaKnown RBP15.79■□□□□ 0.12
PTPN4-211ENST00000488279 NHLH2Q02577 135 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 BLNKQ8WV28 456 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 LINC00477Q96M19 166 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 SLC25A31Q9H0C2 315 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 LINC00588Q9Y4M8 146 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 NACAE9PAV3 2078 aa15.79■□□□□ 0.12
PTPN4-211ENST00000488279 NBDYA0A0U1RRE5 68 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GAGE12BA1L429 117 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 E5RGE8 158 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GAGE7O76087 117 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 NDUFB4O95168 129 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GAGE12FP0CL80 117 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GAGE12GP0CL81 117 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GAGE12IP0CL82 117 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 PYYP10082 97 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 ERCC8Q13216 396 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GCSAMLQ5JQS6 135 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 OR5C1Q8NGR4 320 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 THAP6Q8TBB0 222 aa15.78■□□□□ 0.12
PTPN4-211ENST00000488279 GNPNAT1Q96EK6 184 aaPredicted RBP15.78■□□□□ 0.12
PTPN4-211ENST00000488279 TRAV26-1A0A087WT03 109 aa15.77■□□□□ 0.12
PTPN4-211ENST00000488279 SIX6O95475 246 aa15.77■□□□□ 0.12
PTPN4-211ENST00000488279 M6PRP20645 277 aa15.77■□□□□ 0.12
PTPN4-211ENST00000488279 NMES1Q9C002 83 aa15.77■□□□□ 0.12
PTPN4-211ENST00000488279 AAMDCQ9H7C9 122 aa15.77■□□□□ 0.12
PTPN4-211ENST00000488279 DAZ2Q13117 558 aaKnown RBP15.76■□□□□ 0.11
PTPN4-211ENST00000488279 SSX7Q7RTT5 188 aa15.76■□□□□ 0.11
PTPN4-211ENST00000488279 EXOC3-AS1Q8N2X6 119 aa15.76■□□□□ 0.11
PTPN4-211ENST00000488279 RXFP4Q8TDU9 374 aa15.76■□□□□ 0.11
PTPN4-211ENST00000488279 ZNF503Q96F45 646 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms