RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 LRRC20Q8TCA0 184 aa8.79□□□□□ -1
SDC3-204ENST00000487984 GPR82Q96P67 336 aa8.79□□□□□ -1
SDC3-204ENST00000487984 SLC25A39Q9BZJ4 359 aaPredicted RBP8.79□□□□□ -1
SDC3-204ENST00000487984 TRAV8-2A0A0B4J237 113 aa8.78□□□□□ -1
SDC3-204ENST00000487984 A8MTW9 85 aa8.78□□□□□ -1
SDC3-204ENST00000487984 UMAD1C9J7I0 102 aa8.78□□□□□ -1
SDC3-204ENST00000487984 MBP02144 154 aa8.78□□□□□ -1
SDC3-204ENST00000487984 ATP6V0CP27449 155 aa8.78□□□□□ -1
SDC3-204ENST00000487984 S100A7P31151 101 aa8.78□□□□□ -1
SDC3-204ENST00000487984 CAMLGP49069 296 aa8.78□□□□□ -1
SDC3-204ENST00000487984 RAB5CP51148 216 aa8.78□□□□□ -1
SDC3-204ENST00000487984 SELENOTP62341 195 aa8.78□□□□□ -1
SDC3-204ENST00000487984 IGFL4Q6B9Z1 124 aa8.78□□□□□ -1
SDC3-204ENST00000487984 AMTNQ6UX39 209 aa8.78□□□□□ -1
SDC3-204ENST00000487984 ZNF680Q8NEM1 530 aa8.78□□□□□ -1
SDC3-204ENST00000487984 SHANK2-AS3Q9BTD1 123 aa8.78□□□□□ -1
SDC3-204ENST00000487984 DKK2Q9UBU2 259 aa8.78□□□□□ -1
SDC3-204ENST00000487984 HIGD1AQ9Y241 93 aa8.78□□□□□ -1
SDC3-204ENST00000487984 GOLT1BQ9Y3E0 138 aa8.78□□□□□ -1
SDC3-204ENST00000487984 HYPMO75409 117 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 LINC00869P0C866 280 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 PLP1P60201 277 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 AKR1C8PQ5T2L2 129 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 FAM222AQ5U5X8 452 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 RNF182Q8N6D2 247 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 OR2G3Q8NGZ4 309 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 RNF141Q8WVD5 230 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 TMED6Q8WW62 240 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 NDUFAF3Q9BU61 184 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 NPCDR1Q9BY65 106 aa8.77□□□□□ -1.01
SDC3-204ENST00000487984 TEX48A0A1B0GUV7 120 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 LOC102723971A0A1B0GUV8 181 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 RGS13O14921 159 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 AGPAT2O15120 278 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 HBE1P02100 147 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 OR5G3P0C626 314 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 RPL7P18124 248 aaKnown RBP8.76□□□□□ -1.01
SDC3-204ENST00000487984 RPL29P47914 159 aaKnown RBP8.76□□□□□ -1.01
SDC3-204ENST00000487984 CNN1P51911 297 aaKnown RBP8.76□□□□□ -1.01
SDC3-204ENST00000487984 ALKAL2Q6UX46 152 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 IGF2BP2-AS1Q96M15 143 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 UHRF2Q96PU4 802 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 NIPSNAP3BQ9BS92 247 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 PLA2G2EQ9NZK7 142 aa8.76□□□□□ -1.01
SDC3-204ENST00000487984 YTHDF2Q9Y5A9 579 aaKnown RBP8.76□□□□□ -1.01
SDC3-204ENST00000487984 M0R2Z0 102 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 DUSP14O95147 198 aaKnown RBP8.75□□□□□ -1.01
SDC3-204ENST00000487984 P0DMU3 169 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 FAM231AP0DMU4 169 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 FAM231CP0DMU5 169 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 BLOC1S1P78537 153 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 IFITM2Q01629 132 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 SPINK13Q1W4C9 94 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 RRN3P1Q2M238 152 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 ACOT6Q3I5F7 207 aaPredicted RBP8.75□□□□□ -1.01
SDC3-204ENST00000487984 PXDC1Q5TGL8 231 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 DPPA3Q6W0C5 159 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 Q6ZRG5 221 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 S100A7AQ86SG5 101 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 POM121L12Q8N7R1 296 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 ZNF738Q8NE65 137 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 MGST2Q99735 147 aa8.75□□□□□ -1.01
SDC3-204ENST00000487984 A0A087X0K7 114 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 CRXO43186 299 aaPredicted RBP8.74□□□□□ -1.01
SDC3-204ENST00000487984 INSP01308 110 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 SULT1A2P50226 295 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 B2MP61769 119 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 FFAR4Q5NUL3 377 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 PATE2Q6UY27 113 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 SAT2Q96F10 170 aaPredicted RBP8.74□□□□□ -1.01
SDC3-204ENST00000487984 TMEM208Q9BTX3 173 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 SH3BGRL3Q9H299 93 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 PXMP4Q9Y6I8 212 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 HERC2O95714 4834 aa8.74□□□□□ -1.01
SDC3-204ENST00000487984 TEX46H3BTG2 121 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 PRM2P04554 102 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 HTN3P15516 51 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 M6PRP20645 277 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 RAB2AP61019 212 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 OR1L4Q8NGR5 311 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 FAM210BQ96KR6 192 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 PFDN5Q99471 154 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 SLC39A9Q9NUM3 307 aa8.73□□□□□ -1.01
SDC3-204ENST00000487984 TRAV12-2A0A075B6T6 113 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 A0A1W2PPV4 95 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 ZNF705GA8MUZ8 300 aaPredicted RBP8.72□□□□□ -1.01
SDC3-204ENST00000487984 MRPS12O15235 138 aaKnown RBP8.72□□□□□ -1.01
SDC3-204ENST00000487984 PRB4P10163 310 aaPredicted RBP8.72□□□□□ -1.01
SDC3-204ENST00000487984 DAD1P61803 113 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 HIST1H1AQ02539 215 aaPredicted RBP8.72□□□□□ -1.01
SDC3-204ENST00000487984 PSG3Q16557 428 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 MIC13Q5XKP0 118 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 OR8A1Q8NGG7 326 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 ACTR3CQ9C0K3 210 aaPredicted RBP8.72□□□□□ -1.01
SDC3-204ENST00000487984 RNF24Q9Y225 148 aa8.72□□□□□ -1.01
SDC3-204ENST00000487984 FAT2Q9NYQ8 4349 aa8.71□□□□□ -1.01
SDC3-204ENST00000487984 DNAH2Q9P225 4427 aa8.71□□□□□ -1.02
SDC3-204ENST00000487984 CLLU1Q5K131 121 aa8.71□□□□□ -1.02
SDC3-204ENST00000487984 FAM74A1Q5RGS3 127 aa8.71□□□□□ -1.02
SDC3-204ENST00000487984 LINC00305Q7Z4B0 112 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms