RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 IFI27L1Q96BM0 104 aa8.86□□□□□ -0.99
HDAC6-228ENST00000486227 FOXC2Q99958 501 aa8.86□□□□□ -0.99
HDAC6-228ENST00000486227 NDUFA4L2Q9NRX3 87 aa8.86□□□□□ -0.99
HDAC6-228ENST00000486227 HIVEP2P31629 2446 aa8.86□□□□□ -0.99
HDAC6-228ENST00000486227 FABP5P3A8MUU1 101 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 GUSBP1Q15486 140 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 FER1L6-AS1Q8NA97 138 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 KLHL30-AS1Q8NEE0 82 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 VCX2Q9H322 139 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 TRGV2A0A075B6R0 118 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 SRRM4A7MD48 611 aaKnown RBP8.85□□□□□ -0.99
HDAC6-228ENST00000486227 ASIPP42127 132 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 DEFB121Q5J5C9 76 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 OR1N2Q8NGR9 330 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 YPEL4Q96NS1 127 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 MRPL16Q9NX20 251 aaKnown RBP8.85□□□□□ -0.99
HDAC6-228ENST00000486227 CTSZQ9UBR2 303 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 TTC32Q5I0X7 151 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 NAA38Q9BRA0 125 aaKnown RBP8.85□□□□□ -0.99
HDAC6-228ENST00000486227 TPSG1Q9NRR2 321 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 IGHV2-70DA0A0C4DH43 119 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 CCL25O15444 150 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 USMG5Q96IX5 58 aa8.85□□□□□ -0.99
HDAC6-228ENST00000486227 H7C1H1 209 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 RUSC1-AS1Q66K80 236 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 NUPR1O60356 82 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 KIR3DS1Q14943 382 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 LCNL1Q6ZST4 164 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 LINC00311Q8N616 119 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 TRAV8-1A0A0A6YYK1 113 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 PPIFP30405 207 aaKnown RBP8.84□□□□□ -0.99
HDAC6-228ENST00000486227 ZNF562Q6V9R5 426 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 TMEM190Q8WZ59 177 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 ZNF479Q96JC4 524 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 KAAG1Q9UBP8 84 aa8.84□□□□□ -0.99
HDAC6-228ENST00000486227 NPIPB5A8MRT5 1133 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 TCRAP04437 139 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 PAX1P15863 534 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 WT1-ASQ06250 92 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 MAJINQ3KP22 176 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 IGKV2-40A0A087WW87 121 aaPredicted RBP8.83□□□□□ -1
HDAC6-228ENST00000486227 LHBP01229 141 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 IGKV2D-40P01614 121 aaPredicted RBP8.83□□□□□ -1
HDAC6-228ENST00000486227 RNASE4P34096 147 aaKnown RBP8.83□□□□□ -1
HDAC6-228ENST00000486227 LINC00479Q96M42 142 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 EML6Q6ZMW3 1958 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 TMEM262E9PQX1 116 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 KIR2DL4Q99706 377 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 CCDC168Q8NDH2 2452 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 F2Z2F3 143 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 MSMPQ1L6U9 139 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 TDRG1Q3Y452 100 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 DPH3Q96FX2 82 aa8.83□□□□□ -1
HDAC6-228ENST00000486227 C22orf46C9J442 243 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 DPM2O94777 84 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 PPBPP02775 128 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 NDPQ00604 133 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 SLAQ13239 276 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 ASCL2Q99929 193 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 C11orf1Q9H5F2 150 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 MED12LQ86YW9 2145 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 SMIM27A0A1W2PRY6 76 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 IGLC7A0M8Q6 106 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 PRR31Q5SQ13 230 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 IGFL4Q6B9Z1 124 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 RNASE8Q8TDE3 154 aaKnown RBP8.82□□□□□ -1
HDAC6-228ENST00000486227 RCHY1Q96PM5 261 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 TRBV7-1A0A0A6YYK4 115 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 FAM231BA6NCW3 169 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 LINC01559Q495D7 138 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 FAM231DQ6ZW35 169 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 NXT2Q9NPJ8 142 aaKnown RBP8.82□□□□□ -1
HDAC6-228ENST00000486227 COX6CP09669 75 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 LEPP41159 167 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 DEFB113Q30KQ7 82 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 BCL6BQ8N143 479 aaPredicted RBP8.82□□□□□ -1
HDAC6-228ENST00000486227 GTSF1LQ9H1H1 148 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 TNFRSF18Q9Y5U5 241 aa8.82□□□□□ -1
HDAC6-228ENST00000486227 CEP192Q8TEP8 1941 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 H3BRM9 83 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 GAGE13Q4V321 117 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 SIGLEC15Q6ZMC9 328 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 WFDC12Q8WWY7 111 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 SMPXQ9UHP9 88 aa8.81□□□□□ -1
HDAC6-228ENST00000486227 VWC2Q2TAL6 325 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 BVES-AS1Q5T3Y7 98 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 Q8NA96 180 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 GFRA4Q9GZZ7 299 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 IGKV3OR2-268A0A0C4DH90 116 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 ZNF256Q9Y2P7 627 aaPredicted RBP8.8□□□□□ -1
HDAC6-228ENST00000486227 C9orf118A6NHY6 69 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 K7EP13 123 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 ATP6V0E1O15342 81 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 NDUFB8O95169 186 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 CT83Q5H943 113 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 PAPPA-AS1Q5QFB9 102 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 SRSF8Q9BRL6 282 aaKnown RBP8.8□□□□□ -1
HDAC6-228ENST00000486227 FAM223BA6NKX1 122 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 G3V318 75 aa8.8□□□□□ -1
HDAC6-228ENST00000486227 K7EN84 100 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms