RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 OR10G9Q8NGN4 311 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 OR10G7Q8NGN6 311 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 TMEM37Q8WXS4 190 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 AQP10Q96PS8 301 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 OVOL2Q9BRP0 275 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 HRH4Q9H3N8 390 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 C11orf1Q9H5F2 150 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 RPH3ALQ9UNE2 315 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 TRAV5A0A0B4J249 113 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 F6UB75 175 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 J3KRW8 73 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 OR10J4P0C629 311 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 NBEAP1P0C6P0 100 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 MIFP14174 115 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 HTN1P15515 57 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 CNN1P51911 297 aaKnown RBP5.91□□□□□ -1.46
USP40-216ENST00000485943 EMP1P54849 157 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 PATE2Q6UY27 113 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 LINC00322Q6ZN03 302 aaPredicted RBP5.91□□□□□ -1.46
USP40-216ENST00000485943 PQLC2Q6ZP29 291 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 MIR17HGQ75NE6 70 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 CCDC28AQ8IWP9 274 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 OR2G3Q8NGZ4 309 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 STOML3Q8TAV4 291 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 RAB24Q969Q5 203 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 HYLS1Q96M11 299 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 ARPC5LQ9BPX5 153 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 PARD6GQ9BYG4 376 aaPredicted RBP5.91□□□□□ -1.46
USP40-216ENST00000485943 ACTR3CQ9C0K3 210 aaPredicted RBP5.91□□□□□ -1.46
USP40-216ENST00000485943 KLK5Q9Y337 293 aaPredicted RBP5.91□□□□□ -1.46
USP40-216ENST00000485943 TGP01266 2768 aa5.91□□□□□ -1.46
USP40-216ENST00000485943 A0A0D9SG52 128 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 A0A0J9YX75 114 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 TMEM189A5PLL7 270 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 BOLA2-SMG1P6H3BVE0 249 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 ZNF705DP0CH99 300 aaPredicted RBP5.9□□□□□ -1.46
USP40-216ENST00000485943 ZNF705BP0CI00 300 aaPredicted RBP5.9□□□□□ -1.46
USP40-216ENST00000485943 PYYP10082 97 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 LEPP41159 167 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 RANP62826 216 aaKnown RBP5.9□□□□□ -1.46
USP40-216ENST00000485943 SERF2P84101 59 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 PDE6HQ13956 83 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 ICAM4Q14773 271 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 SPINK13Q1W4C9 94 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 RRN3P1Q2M238 152 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 OR8A1Q8NGG7 326 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 C11orf45Q8TAV5 145 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 LINC01587Q99440 93 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 NIPSNAP3BQ9BS92 247 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 ZNF471Q9BX82 626 aaPredicted RBP5.9□□□□□ -1.46
USP40-216ENST00000485943 ZNF331Q9NQX6 463 aaPredicted RBP5.9□□□□□ -1.46
USP40-216ENST00000485943 TMEM14CQ9P0S9 112 aa5.9□□□□□ -1.46
USP40-216ENST00000485943 TRBV19A0A075B6N1 114 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 TEX48A0A1B0GUV7 120 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 NUPR2A6NF83 97 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 TEX46H3BTG2 121 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 DEFB4AO15263 64 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 ZNF253O75346 499 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 ATP6V0CP27449 155 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 CDKN1BP46527 198 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 RAB2AP61019 212 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 GCSAMLQ5JQS6 135 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 GDF5OSQ5U4N7 250 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 EIF5AL1Q6IS14 154 aaKnown RBP5.89□□□□□ -1.47
USP40-216ENST00000485943 AKAP14Q86UN6 197 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 RXFP4Q8TDU9 374 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 NDFIP1Q9BT67 221 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 PSMG3Q9BT73 122 aaPredicted RBP5.89□□□□□ -1.47
USP40-216ENST00000485943 SLC25A2Q9BXI2 301 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 TNFSF18Q9UNG2 199 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 RFNGQ9Y644 331 aa5.89□□□□□ -1.47
USP40-216ENST00000485943 SMIM9A6NGZ8 99 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 C9orf118A6NHY6 69 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 ZNF705FA8MVS1 300 aaPredicted RBP5.88□□□□□ -1.47
USP40-216ENST00000485943 SMLR1H3BR10 107 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 M0R2Z0 102 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 SOCS3O14543 225 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 HMGB3O15347 200 aaKnown RBP5.88□□□□□ -1.47
USP40-216ENST00000485943 CXorf1O96002 111 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 IGLC2P0DOY2 106 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 HLA-DMBP28068 263 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 DEFB1P60022 68 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 MORN5Q5VZ52 161 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 RPL7L1Q6DKI1 246 aaKnown RBP5.88□□□□□ -1.47
USP40-216ENST00000485943 TMEM256Q8N2U0 113 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 MRPL53Q96EL3 112 aaKnown RBP5.88□□□□□ -1.47
USP40-216ENST00000485943 C20orf173Q96LM9 149 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 IGF2BP2-AS1Q96M15 143 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 C17orf77Q96MU5 243 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 SLC35B3Q9H1N7 401 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 TMEM167BQ9NRX6 74 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 ZNF586Q9NXT0 402 aa5.88□□□□□ -1.47
USP40-216ENST00000485943 TRAV12-2A0A075B6T6 113 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 IGHV4-28A0A0C4DH34 117 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 LOC102723971A0A1B0GUV8 181 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 SNURFLB1AK76 121 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 H3BQ15 152 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 SLC17A3O00476 420 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 IFNA7P01567 189 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 SLC25A5P05141 298 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms