RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 NPCDR1Q9BY65 106 aa12.57□□□□□ -0.4
COL9A3-212ENST00000481800 OR5AC2Q9NZP5 309 aa12.57□□□□□ -0.4
COL9A3-212ENST00000481800 PRM2P04554 102 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 P0DMU3 169 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 FAM231AP0DMU4 169 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 FAM231CP0DMU5 169 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 HTN1P15515 57 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 TSPOP30536 169 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 CLINT1Q14677 625 aa12.56□□□□□ -0.4
COL9A3-212ENST00000481800 LYRM9A8MSI8 78 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 PRAC2D3DTV9 90 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 ZNF253O75346 499 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 TAS2R60P59551 318 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 KCNIP2Q9NS61 270 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 ZNF586Q9NXT0 402 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 TIMM9Q9Y5J7 89 aa12.55□□□□□ -0.4
COL9A3-212ENST00000481800 H0YIZ8 118 aa12.54□□□□□ -0.4
COL9A3-212ENST00000481800 PET100P0DJ07 73 aa12.54□□□□□ -0.4
COL9A3-212ENST00000481800 H2BFSP57053 126 aa12.54□□□□□ -0.4
COL9A3-212ENST00000481800 PPP1R1CQ8WVI7 109 aa12.54□□□□□ -0.4
COL9A3-212ENST00000481800 TMEM14CQ9P0S9 112 aa12.54□□□□□ -0.4
COL9A3-212ENST00000481800 TRBV19A0A075B6N1 114 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 DEFB130BP0DP73 79 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 DEFB130AP0DP74 79 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 HIST1H1EP10412 219 aaKnown RBP12.53□□□□□ -0.4
COL9A3-212ENST00000481800 AZU1P20160 251 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 GCSAMLQ5JQS6 135 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 C20orf144Q9BQM9 153 aa12.53□□□□□ -0.4
COL9A3-212ENST00000481800 C17orf112F2Z3M2 114 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 H7BYZ3 331 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 LEPP41159 167 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 POM121L12Q8N7R1 296 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 BLNKQ8WV28 456 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 MRPL53Q96EL3 112 aaKnown RBP12.52□□□□□ -0.41
COL9A3-212ENST00000481800 C16orf74Q96GX8 76 aa12.52□□□□□ -0.41
COL9A3-212ENST00000481800 PARD6GQ9BYG4 376 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-212ENST00000481800 WDR61Q9GZS3 305 aaKnown RBP12.52□□□□□ -0.41
COL9A3-212ENST00000481800 BIRC6Q9NR09 4857 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 MPC2O95563 127 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 PYYP10082 97 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 PDE6HQ13956 83 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 ZNF493Q6ZR52 646 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 UBE2DNLQ8IWF7 75 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 CCDC28AQ8IWP9 274 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 AAMDCQ9H7C9 122 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 PRELID1Q9Y255 219 aa12.51□□□□□ -0.41
COL9A3-212ENST00000481800 NPIPB6E9PJ23 425 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 J3KRW8 73 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 GFI1BQ5VTD9 330 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 TMEM88Q6PEY1 159 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 ODF3Q96PU9 254 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 ATP5SQ99766 215 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 HSPB11Q9Y547 144 aa12.5□□□□□ -0.41
COL9A3-212ENST00000481800 TIMM8BQ9Y5J9 83 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-212ENST00000481800 PLAC8L1A1L4L8 177 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 M0R3E3 92 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 IFNA5P01569 189 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 CT45A10P0DMU9 189 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 KIR3DS1Q14943 382 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 FCN2Q15485 313 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 MIR17HGQ75NE6 70 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 SCGB1C1Q8TD33 95 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 TMEM263Q8WUH6 116 aaKnown RBP12.49□□□□□ -0.41
COL9A3-212ENST00000481800 SLC25A2Q9BXI2 301 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 MRPL32Q9BYC8 188 aaKnown RBP12.49□□□□□ -0.41
COL9A3-212ENST00000481800 OR51M1Q9H341 326 aa12.49□□□□□ -0.41
COL9A3-212ENST00000481800 NDUFB4O95168 129 aa12.48□□□□□ -0.41
COL9A3-212ENST00000481800 RPL12P30050 165 aaKnown RBP12.48□□□□□ -0.41
COL9A3-212ENST00000481800 EXOC3-AS1Q8N2X6 119 aa12.48□□□□□ -0.41
COL9A3-212ENST00000481800 PAXXQ9BUH6 204 aa12.48□□□□□ -0.41
COL9A3-212ENST00000481800 TRAV12-3A0A0B4J271 114 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 CBY3A6NI87 242 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 F5H768 121 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 ATP5G1P05496 136 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 NBEAP1P0C6P0 100 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 ATP5G3P48201 142 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 ERCC8Q13216 396 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 ICAM4Q14773 271 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 RNASE8Q8TDE3 154 aaKnown RBP12.47□□□□□ -0.41
COL9A3-212ENST00000481800 FAM167A-AS1Q96KT0 104 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 LINC00477Q96M19 166 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 SMIM3Q9BZL3 60 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 NOP10Q9NPE3 64 aaKnown RBP12.47□□□□□ -0.41
COL9A3-212ENST00000481800 MBD2Q9UBB5 411 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 FUT9Q9Y231 359 aa12.47□□□□□ -0.41
COL9A3-212ENST00000481800 FFAR4Q5NUL3 377 aa12.46□□□□□ -0.41
COL9A3-212ENST00000481800 FAM122CQ6P4D5 195 aa12.46□□□□□ -0.41
COL9A3-212ENST00000481800 C15orf53Q8NAA6 179 aa12.46□□□□□ -0.41
COL9A3-212ENST00000481800 RNF141Q8WVD5 230 aa12.46□□□□□ -0.41
COL9A3-212ENST00000481800 SNURFLB1AK76 121 aa12.45□□□□□ -0.42
COL9A3-212ENST00000481800 OR7C2O60412 319 aa12.45□□□□□ -0.42
COL9A3-212ENST00000481800 SLC25A5P05141 298 aaKnown RBP12.45□□□□□ -0.42
COL9A3-212ENST00000481800 OR10J4P0C629 311 aa12.45□□□□□ -0.42
COL9A3-212ENST00000481800 AGPAT4-IT1Q9H0P7 198 aa12.45□□□□□ -0.42
COL9A3-212ENST00000481800 ALG5Q9Y673 324 aa12.45□□□□□ -0.42
COL9A3-212ENST00000481800 VPS13DQ5THJ4 4388 aa12.44□□□□□ -0.42
COL9A3-212ENST00000481800 RNF212Q495C1 297 aa12.44□□□□□ -0.42
COL9A3-212ENST00000481800 TMEM78Q5T7P6 136 aa12.44□□□□□ -0.42
COL9A3-212ENST00000481800 PYGO2Q9BRQ0 406 aa12.44□□□□□ -0.42
COL9A3-212ENST00000481800 KMT2AQ03164 3969 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms