RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 SCO2A0A1W2PP80 73 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 C11orf94C9JXX5 98 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 DNASE2O00115 360 aaPredicted RBP9.73□□□□□ -0.85
CHD3-210ENST00000479080 PPT1P50897 306 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 PSG9Q00887 426 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 GDF5OSQ5U4N7 250 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 CITED4Q96RK1 184 aa9.73□□□□□ -0.85
CHD3-210ENST00000479080 NOTCH3Q9UM47 2321 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 IGKV2-40A0A087WW87 121 aaPredicted RBP9.72□□□□□ -0.85
CHD3-210ENST00000479080 OR4C46A6NHA9 309 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 IGKV2D-40P01614 121 aaPredicted RBP9.72□□□□□ -0.85
CHD3-210ENST00000479080 DEFB131AP59861 70 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 MEF2BQ02080 365 aaPredicted RBP9.72□□□□□ -0.85
CHD3-210ENST00000479080 PSMG4Q5JS54 123 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 CST9LP1Q5W188 147 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 COMMD7Q86VX2 200 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 C11orf52Q96A22 123 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 MRPL53Q96EL3 112 aaKnown RBP9.72□□□□□ -0.85
CHD3-210ENST00000479080 LINC00052Q96N35 136 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 VAX2Q9UIW0 290 aa9.72□□□□□ -0.85
CHD3-210ENST00000479080 RBMY1BA6NDE4 496 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 RBMY1EA6NEQ0 496 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 KNCNA6PVL3 124 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 DIRC3C9JPN6 131 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 IFNA1P01562 189 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 TCRAP04437 139 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 SLC25A5P05141 298 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 SRP19P09132 144 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 RBMY1DP0C7P1 496 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 ZNF705DP0CH99 300 aaPredicted RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 ZNF705BP0CI00 300 aaPredicted RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 PAFAH1B2P68402 229 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 APRG1Q8IVJ8 170 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 Q8N1Y9 231 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 C5orf17Q8NAS9 161 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 C2CD4CQ8TF44 421 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 RPUSD4Q96CM3 377 aaKnown RBP9.71□□□□□ -0.86
CHD3-210ENST00000479080 LINC00479Q96M42 142 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 PRR25Q96S07 402 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 ASCL2Q99929 193 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 EPDR1Q9UM22 224 aa9.71□□□□□ -0.86
CHD3-210ENST00000479080 PEX7O00628 323 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 IGLV2-11P01706 119 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 ERCC8Q13216 396 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 GOLT1AQ6ZVE7 132 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 ZNF738Q8NE65 137 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 VGLL1Q99990 258 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 DERL1Q9BUN8 251 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 AAMDCQ9H7C9 122 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 RPH3ALQ9UNE2 315 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 PRELID1Q9Y255 219 aa9.7□□□□□ -0.86
CHD3-210ENST00000479080 TRAV8-1A0A0A6YYK1 113 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 TRAV34A0A0B4J273 112 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 A0A0J9YX75 114 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 RAB19A4D1S5 217 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 A8MTW9 85 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 ID1P41134 155 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 KPRPQ5T749 579 aaPredicted RBP9.69□□□□□ -0.86
CHD3-210ENST00000479080 SAMD13Q5VXD3 122 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 OR8A1Q8NGG7 326 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 SGK494Q96LW2 274 aa9.69□□□□□ -0.86
CHD3-210ENST00000479080 NPIPB6E9PJ23 425 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 SNRPD3P62318 126 aaKnown RBP9.68□□□□□ -0.86
CHD3-210ENST00000479080 SLC7A5P1Q8MH63 180 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 EIF4E3Q8N5X7 224 aaKnown RBP9.68□□□□□ -0.86
CHD3-210ENST00000479080 DEFB125Q8N687 156 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 ARL6IP6Q8N6S5 226 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 CYB561D1Q8N8Q1 229 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 TVP23CQ96ET8 276 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 FAM110AQ9BQ89 295 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 TXNDC17Q9BRA2 123 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 ATG101Q9BSB4 218 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 GPR61Q9BZJ8 451 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 NKX6-2Q9C056 277 aaPredicted RBP9.68□□□□□ -0.86
CHD3-210ENST00000479080 EIF5A2Q9GZV4 153 aaKnown RBP9.68□□□□□ -0.86
CHD3-210ENST00000479080 SAV1Q9H4B6 383 aaPredicted RBP9.68□□□□□ -0.86
CHD3-210ENST00000479080 CLEC5AQ9NY25 188 aa9.68□□□□□ -0.86
CHD3-210ENST00000479080 TRBV20OR9-2A0A075B6H5 130 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 OR11H12B2RN74 326 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 NDUFS6O75380 124 aaKnown RBP9.67□□□□□ -0.86
CHD3-210ENST00000479080 ADCYAP1P18509 176 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 TAGLN2P37802 199 aaKnown RBP9.67□□□□□ -0.86
CHD3-210ENST00000479080 AMTNQ6UX39 209 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 FOXI2Q6ZQN5 318 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 Q8TAT8 98 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 HIST1H2BAQ96A08 127 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 IGF2BP2-AS1Q96M15 143 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 AGPAT4-IT1Q9H0P7 198 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 KLF12Q9Y4X4 402 aa9.67□□□□□ -0.86
CHD3-210ENST00000479080 F6UZH7 168 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 H3BMM0 161 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 HLA-DRB4P13762 266 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 CNN1P51911 297 aaKnown RBP9.66□□□□□ -0.86
CHD3-210ENST00000479080 HIST1H1AQ02539 215 aaPredicted RBP9.66□□□□□ -0.86
CHD3-210ENST00000479080 C9orf47Q6ZRZ4 202 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 Q86TA4 180 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 CMTM2Q8TAZ6 248 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 FAM19A4Q96LR4 140 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 TCEAL7Q9BRU2 100 aa9.66□□□□□ -0.86
CHD3-210ENST00000479080 HLA-DRB4X5D2U9 266 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms