RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 FUT9Q9Y231 359 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 TRAV12-2A0A075B6T6 113 aa11.21□□□□□ -0.61
HMGA1-206ENST00000478214 SMIM9A6NGZ8 99 aa11.21□□□□□ -0.61
HMGA1-206ENST00000478214 OR51M1Q9H341 326 aa11.21□□□□□ -0.61
HMGA1-206ENST00000478214 TIMM9Q9Y5J7 89 aa11.21□□□□□ -0.61
HMGA1-206ENST00000478214 M0R3E3 92 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 INSP01308 110 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 EMP1P54849 157 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 PDE6HQ13956 83 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 EXOC3-AS1Q8N2X6 119 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 OR2T35Q8NGX2 323 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 OR10J6PQ8NGY7 276 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 TMEM208Q9BTX3 173 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 PAXXQ9BUH6 204 aa11.2□□□□□ -0.62
HMGA1-206ENST00000478214 KLK5Q9Y337 293 aaPredicted RBP11.2□□□□□ -0.62
HMGA1-206ENST00000478214 FXYD6-FXYD2A0A087WZ82 144 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 EIF3GO75821 320 aaKnown RBP eCLIP11.19□□□□□ -0.62
HMGA1-206ENST00000478214 JTBO76095 146 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 HBE1P02100 147 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 OR10J4P0C629 311 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 NBEAP1P0C6P0 100 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 RNF141Q8WVD5 230 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 FXYD5Q96DB9 178 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 MRPL53Q96EL3 112 aaKnown RBP11.19□□□□□ -0.62
HMGA1-206ENST00000478214 ZNF503Q96F45 646 aa11.19□□□□□ -0.62
HMGA1-206ENST00000478214 LOC102723971A0A1B0GUV8 181 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 RNF222A6NCQ9 220 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 G3V3Q6 166 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 OR7C2O60412 319 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 PRM2P04554 102 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 ZNF266Q14584 549 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 RRN3P1Q2M238 152 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 ACOT6Q3I5F7 207 aaPredicted RBP11.18□□□□□ -0.62
HMGA1-206ENST00000478214 Q6ZTC4 211 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 ZNF767PQ75MW2 155 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 RPP25LQ8N5L8 163 aaKnown RBP11.18□□□□□ -0.62
HMGA1-206ENST00000478214 HSD17B11Q8NBQ5 300 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 INO80EQ8NBZ0 244 aaPredicted RBP11.18□□□□□ -0.62
HMGA1-206ENST00000478214 TNFSF18Q9UNG2 199 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 PRELID1Q9Y255 219 aa11.18□□□□□ -0.62
HMGA1-206ENST00000478214 TMEM189A5PLL7 270 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 ZNF705GA8MUZ8 300 aaPredicted RBP11.17□□□□□ -0.62
HMGA1-206ENST00000478214 NPIPB6E9PJ23 425 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 M6PRP20645 277 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 CDKN1BP46527 198 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 RAB2AP61019 212 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 ICAM4Q14773 271 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 KIR3DS1Q14943 382 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 C12orf74Q32Q52 190 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 PHYHIPLQ96FC7 376 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 AAMDCQ9H7C9 122 aa11.17□□□□□ -0.62
HMGA1-206ENST00000478214 HYDINQ4G0P3 5121 aa11.16□□□□□ -0.62
HMGA1-206ENST00000478214 CT45A10P0DMU9 189 aa11.16□□□□□ -0.62
HMGA1-206ENST00000478214 UBE2L3P68036 154 aaKnown RBP11.16□□□□□ -0.62
HMGA1-206ENST00000478214 ERCC8Q13216 396 aa11.16□□□□□ -0.62
HMGA1-206ENST00000478214 FAM122CQ6P4D5 195 aa11.16□□□□□ -0.62
HMGA1-206ENST00000478214 C11orf94C9JXX5 98 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 SMLR1H3BR10 107 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 SPART-AS1P0CW21 52 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 ATP6V0CP27449 155 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 TSPOP30536 169 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 TAS2R45P59539 299 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 KHDC3LQ587J8 217 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 OR10G4Q8NGN3 311 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 OR10G9Q8NGN4 311 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 OR10G7Q8NGN6 311 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 LINC01587Q99440 93 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 DKK2Q9UBU2 259 aa11.15□□□□□ -0.62
HMGA1-206ENST00000478214 YTHDF2Q9Y5A9 579 aaKnown RBP11.15□□□□□ -0.62
HMGA1-206ENST00000478214 IGKV2-40A0A087WW87 121 aaPredicted RBP11.14□□□□□ -0.63
HMGA1-206ENST00000478214 TRAV10A0A0B4J240 114 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 A0A1W2PPV4 95 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 J3KRW8 73 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 IGKV2D-40P01614 121 aaPredicted RBP11.14□□□□□ -0.63
HMGA1-206ENST00000478214 AZU1P20160 251 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 RANP62826 216 aaKnown RBP11.14□□□□□ -0.63
HMGA1-206ENST00000478214 FAM222AQ5U5X8 452 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 GFI1BQ5VTD9 330 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 RPL7L1Q6DKI1 246 aaKnown RBP11.14□□□□□ -0.63
HMGA1-206ENST00000478214 OR2G3Q8NGZ4 309 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 C2CD4CQ8TF44 421 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 ODF3Q96PU9 254 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 PSMG3Q9BT73 122 aaPredicted RBP11.14□□□□□ -0.63
HMGA1-206ENST00000478214 AGPAT4-IT1Q9H0P7 198 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 SH3BGRL3Q9H299 93 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 PLA2G2EQ9NZK7 142 aa11.14□□□□□ -0.63
HMGA1-206ENST00000478214 HMGB3O15347 200 aaKnown RBP11.13□□□□□ -0.63
HMGA1-206ENST00000478214 LEPP41159 167 aa11.13□□□□□ -0.63
HMGA1-206ENST00000478214 TMEM256Q8N2U0 113 aa11.13□□□□□ -0.63
HMGA1-206ENST00000478214 LINC00476Q8WZB0 136 aa11.13□□□□□ -0.63
HMGA1-206ENST00000478214 Q9H3A6 140 aa11.13□□□□□ -0.63
HMGA1-206ENST00000478214 IGLL5B9A064 214 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 ARPC5O15511 151 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 HTN1P15515 57 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 TAS2R60P59551 318 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 LYPD1Q8N2G4 141 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 LINC00477Q96M19 166 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 VGLL1Q99990 258 aa11.12□□□□□ -0.63
HMGA1-206ENST00000478214 DEFB131BA0A096LNP1 70 aa11.11□□□□□ -0.63
HMGA1-206ENST00000478214 BORCS7-ASMTA0A0B4J1R7 106 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms