RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZNF331Q9NQX6 463 aaPredicted RBP10□□□□□ -0.81
UPF3A-204ENST00000475218 WDR83OSQ9Y284 106 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 H3BTX0 84 aa9.99□□□□□ -0.81
UPF3A-204ENST00000475218 AZU1P20160 251 aa9.99□□□□□ -0.81
UPF3A-204ENST00000475218 RAB32Q13637 225 aa9.99□□□□□ -0.81
UPF3A-204ENST00000475218 RRN3P1Q2M238 152 aa9.99□□□□□ -0.81
UPF3A-204ENST00000475218 PRAC2D3DTV9 90 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 H3BQ15 152 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 IGLC2P0DOY2 106 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 CAV2P51636 162 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 VAMP2P63027 116 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 HIST1H1AQ02539 215 aaPredicted RBP9.98□□□□□ -0.81
UPF3A-204ENST00000475218 MIC13Q5XKP0 118 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 NDUFAF3Q9BU61 184 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 PKHD1P08F94 4074 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 KIAA1109Q2LD37 5005 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 TRAV5A0A0B4J249 113 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 INSP01308 110 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 CAMLGP49069 296 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 KIR3DS1Q14943 382 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 TMEM252Q8N6L7 170 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 POM121L12Q8N7R1 296 aa9.98□□□□□ -0.81
UPF3A-204ENST00000475218 RPUSD4Q96CM3 377 aaKnown RBP9.98□□□□□ -0.81
UPF3A-204ENST00000475218 SAT2Q96F10 170 aaPredicted RBP9.98□□□□□ -0.81
UPF3A-204ENST00000475218 LYRM2Q9NU23 88 aaPredicted RBP9.98□□□□□ -0.81
UPF3A-204ENST00000475218 COX7A2P2O60397 106 aa9.97□□□□□ -0.81
UPF3A-204ENST00000475218 NMBP08949 121 aa9.97□□□□□ -0.81
UPF3A-204ENST00000475218 CXCL2P19875 107 aa9.97□□□□□ -0.81
UPF3A-204ENST00000475218 TMUB2Q71RG4 321 aa9.97□□□□□ -0.81
UPF3A-204ENST00000475218 PARD6GQ9BYG4 376 aaPredicted RBP9.97□□□□□ -0.81
UPF3A-204ENST00000475218 PKD1P98161 4303 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 TEX48A0A1B0GUV7 120 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 HTN3P15516 51 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 TSPOP30536 169 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 SULT1A1P50225 295 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 S100A10P60903 97 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 C10orf113Q5VZT2 155 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 LCN15Q6UWW0 184 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 TMEM208Q9BTX3 173 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 DNAJC4Q9NNZ3 241 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 UQCC1Q9NVA1 299 aa9.96□□□□□ -0.81
UPF3A-204ENST00000475218 A0A0D9SG52 128 aa9.96□□□□□ -0.82
UPF3A-204ENST00000475218 UBE2L5PA0A1B0GUS4 154 aa9.96□□□□□ -0.82
UPF3A-204ENST00000475218 BPIFA4PQ86YQ2 179 aa9.96□□□□□ -0.82
UPF3A-204ENST00000475218 NACAE9PAV3 2078 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 SIX6O95475 246 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 P0DMU3 169 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 FAM231AP0DMU4 169 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 FAM231CP0DMU5 169 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 RHOBP62745 196 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 TMEM88Q6PEY1 159 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 S100A7AQ86SG5 101 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 IQCF2Q8IXL9 164 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 PHYHIPLQ96FC7 376 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 FAM210BQ96KR6 192 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 SLC50A1Q9BRV3 221 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 SLC39A9Q9NUM3 307 aa9.95□□□□□ -0.82
UPF3A-204ENST00000475218 RPL29P47914 159 aaKnown RBP9.94□□□□□ -0.82
UPF3A-204ENST00000475218 DAD1P61803 113 aa9.94□□□□□ -0.82
UPF3A-204ENST00000475218 ZNF586Q9NXT0 402 aa9.94□□□□□ -0.82
UPF3A-204ENST00000475218 H0YIZ8 118 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 ZNF345Q14585 488 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 GCSAMLQ5JQS6 135 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 RNF24Q9Y225 148 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 LYRM9A8MSI8 78 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 RTL8CO15255 209 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 PVALBP20472 110 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-204ENST00000475218 CDKN1BP46527 198 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 B2MP61769 119 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 NHLH2Q02577 135 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 RNASE8Q8TDE3 154 aaKnown RBP9.93□□□□□ -0.82
UPF3A-204ENST00000475218 OR5AC2Q9NZP5 309 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 PXMP4Q9Y6I8 212 aa9.93□□□□□ -0.82
UPF3A-204ENST00000475218 A0A1B0GVY2 172 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 M0R2N4 97 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 ARPC5O15511 151 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 SCO1O75880 301 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 NDUFB4O95168 129 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 CT45A10P0DMU9 189 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 FGF7P21781 194 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 TAS2R60P59551 318 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 BAXQ07812 192 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 RAB31Q13636 194 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 GFI1BQ5VTD9 330 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 UQCC3Q6UW78 93 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 Q6ZR54 194 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 Q6ZRG5 221 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 TMEM256Q8N2U0 113 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 LINC01587Q99440 93 aa9.92□□□□□ -0.82
UPF3A-204ENST00000475218 TEX46H3BTG2 121 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 DEFB130BP0DP73 79 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 DEFB130AP0DP74 79 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 OR1L4Q8NGR5 311 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 DYNC1H1Q14204 4646 aaKnown RBP9.91□□□□□ -0.82
UPF3A-204ENST00000475218 TRBV19A0A075B6N1 114 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 FXYD6-FXYD2A0A087WZ82 144 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 NPIPB6E9PJ23 425 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 M0R3E3 92 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 H2BFSP57053 126 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 HBG1P69891 147 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms