RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 BLNKQ8WV28 456 aa13.62□□□□□ -0.23
PTCD3-210ENST00000473829 TRAV12-2A0A075B6T6 113 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 RNF222A6NCQ9 220 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 M0R3E3 92 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 RHOBP62745 196 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 FXYD5Q96DB9 178 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 ZNF503Q96F45 646 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 OR51M1Q9H341 326 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 GOLT1BQ9Y3E0 138 aa13.61□□□□□ -0.23
PTCD3-210ENST00000473829 FXYD6-FXYD2A0A087WZ82 144 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 AMBPP02760 352 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 OR10J4P0C629 311 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 PDE6HQ13956 83 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 EXOC3-AS1Q8N2X6 119 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 TNFSF18Q9UNG2 199 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 TIMM9Q9Y5J7 89 aa13.6□□□□□ -0.23
PTCD3-210ENST00000473829 SMIM9A6NGZ8 99 aa13.59□□□□□ -0.23
PTCD3-210ENST00000473829 INSP01308 110 aa13.59□□□□□ -0.23
PTCD3-210ENST00000473829 HSD17B11Q8NBQ5 300 aa13.59□□□□□ -0.23
PTCD3-210ENST00000473829 MRPL53Q96EL3 112 aaKnown RBP13.59□□□□□ -0.23
PTCD3-210ENST00000473829 PAXXQ9BUH6 204 aa13.59□□□□□ -0.23
PTCD3-210ENST00000473829 OR7C2O60412 319 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 PRM2P04554 102 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 NBEAP1P0C6P0 100 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 EMP1P54849 157 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 RAB2AP61019 212 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 ZNF266Q14584 549 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 KIR3DS1Q14943 382 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 Q6ZTC4 211 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 ZNF767PQ75MW2 155 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 OR10J6PQ8NGY7 276 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 RNF141Q8WVD5 230 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 PHYHIPLQ96FC7 376 aa13.58□□□□□ -0.24
PTCD3-210ENST00000473829 NPIPB6E9PJ23 425 aa13.57□□□□□ -0.24
PTCD3-210ENST00000473829 RPP25LQ8N5L8 163 aaKnown RBP13.57□□□□□ -0.24
PTCD3-210ENST00000473829 TMEM208Q9BTX3 173 aa13.57□□□□□ -0.24
PTCD3-210ENST00000473829 PPP1R14DQ9NXH3 145 aa13.57□□□□□ -0.24
PTCD3-210ENST00000473829 LOC102723971A0A1B0GUV8 181 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 SMLR1H3BR10 107 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 HBE1P02100 147 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 CT45A10P0DMU9 189 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 M6PRP20645 277 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 ATP6V0CP27449 155 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 CDKN1BP46527 198 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 UBE2L3P68036 154 aaKnown RBP13.56□□□□□ -0.24
PTCD3-210ENST00000473829 ICAM4Q14773 271 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 C12orf74Q32Q52 190 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 ACOT6Q3I5F7 207 aaPredicted RBP13.56□□□□□ -0.24
PTCD3-210ENST00000473829 INO80EQ8NBZ0 244 aaPredicted RBP13.56□□□□□ -0.24
PTCD3-210ENST00000473829 SH3BGRL3Q9H299 93 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 PRELID1Q9Y255 219 aa13.56□□□□□ -0.24
PTCD3-210ENST00000473829 ZNF705GA8MUZ8 300 aaPredicted RBP13.55□□□□□ -0.24
PTCD3-210ENST00000473829 ERCC8Q13216 396 aa13.55□□□□□ -0.24
PTCD3-210ENST00000473829 RRN3P1Q2M238 152 aa13.55□□□□□ -0.24
PTCD3-210ENST00000473829 KHDC3LQ587J8 217 aa13.55□□□□□ -0.24
PTCD3-210ENST00000473829 RPL7L1Q6DKI1 246 aaKnown RBP13.55□□□□□ -0.24
PTCD3-210ENST00000473829 FAM122CQ6P4D5 195 aa13.55□□□□□ -0.24
PTCD3-210ENST00000473829 AAMDCQ9H7C9 122 aa13.55□□□□□ -0.24
PTCD3-210ENST00000473829 KLK5Q9Y337 293 aaPredicted RBP13.55□□□□□ -0.24
PTCD3-210ENST00000473829 TMEM189A5PLL7 270 aa13.54□□□□□ -0.24
PTCD3-210ENST00000473829 JTBO76095 146 aa13.54□□□□□ -0.24
PTCD3-210ENST00000473829 OR2G3Q8NGZ4 309 aa13.54□□□□□ -0.24
PTCD3-210ENST00000473829 PSMG3Q9BT73 122 aaPredicted RBP13.54□□□□□ -0.24
PTCD3-210ENST00000473829 IGKV2-40A0A087WW87 121 aaPredicted RBP13.53□□□□□ -0.24
PTCD3-210ENST00000473829 IGKV2D-40P01614 121 aaPredicted RBP13.53□□□□□ -0.24
PTCD3-210ENST00000473829 AZU1P20160 251 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 TAS2R45P59539 299 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 FAM222AQ5U5X8 452 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 GFI1BQ5VTD9 330 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 OR10G4Q8NGN3 311 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 OR10G9Q8NGN4 311 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 OR10G7Q8NGN6 311 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 ODF3Q96PU9 254 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 DKK2Q9UBU2 259 aa13.53□□□□□ -0.24
PTCD3-210ENST00000473829 YTHDF2Q9Y5A9 579 aaKnown RBP13.53□□□□□ -0.24
PTCD3-210ENST00000473829 J3KRW8 73 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 HMGB3O15347 200 aaKnown RBP13.52□□□□□ -0.25
PTCD3-210ENST00000473829 ARPC5O15511 151 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 RANP62826 216 aaKnown RBP13.52□□□□□ -0.25
PTCD3-210ENST00000473829 LINC00476Q8WZB0 136 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 AGPAT4-IT1Q9H0P7 198 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 Q9H3A6 140 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 PLA2G2EQ9NZK7 142 aa13.52□□□□□ -0.25
PTCD3-210ENST00000473829 A0A1W2PPV4 95 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 PLAC8L1A1L4L8 177 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 C11orf94C9JXX5 98 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 SPART-AS1P0CW21 52 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 TMEM256Q8N2U0 113 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 C2CD4CQ8TF44 421 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 FAM19A4Q96LR4 140 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 LINC01587Q99440 93 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 VGLL1Q99990 258 aa13.51□□□□□ -0.25
PTCD3-210ENST00000473829 TRAV10A0A0B4J240 114 aa13.5□□□□□ -0.25
PTCD3-210ENST00000473829 TSPOP30536 169 aa13.5□□□□□ -0.25
PTCD3-210ENST00000473829 LEPP41159 167 aa13.5□□□□□ -0.25
PTCD3-210ENST00000473829 CDC34P49427 236 aaPredicted RBP13.5□□□□□ -0.25
PTCD3-210ENST00000473829 PQLC2Q6ZP29 291 aa13.5□□□□□ -0.25
PTCD3-210ENST00000473829 C9orf47Q6ZRZ4 202 aa13.5□□□□□ -0.25
PTCD3-210ENST00000473829 BORCS7-ASMTA0A0B4J1R7 106 aa13.49□□□□□ -0.25
PTCD3-210ENST00000473829 ARL14EPLP0DKL9 152 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms