RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 BCAP31P51572 246 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 S100A10P60903 97 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 RAB32Q13637 225 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 C10orf113Q5VZT2 155 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 ZNF493Q6ZR52 646 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 OR10J6PQ8NGY7 276 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 MGST2Q99735 147 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 C20orf144Q9BQM9 153 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 DNAH11Q96DT5 4516 aa13.87□□□□□ -0.19
COL9A3-210ENST00000472880 PVALBP20472 110 aaPredicted RBP13.86□□□□□ -0.19
COL9A3-210ENST00000472880 CAV2P51636 162 aa13.86□□□□□ -0.19
COL9A3-210ENST00000472880 CCL18P55774 89 aa13.86□□□□□ -0.19
COL9A3-210ENST00000472880 RNASE8Q8TDE3 154 aaKnown RBP13.86□□□□□ -0.19
COL9A3-210ENST00000472880 NOP10Q9NPE3 64 aaKnown RBP13.86□□□□□ -0.19
COL9A3-210ENST00000472880 H3BTX0 84 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 SLC17A3O00476 420 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 RAB31Q13636 194 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 OPCMLQ14982 345 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 TMEM37Q8WXS4 190 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 PXMP4Q9Y6I8 212 aa13.85□□□□□ -0.19
COL9A3-210ENST00000472880 NBDYA0A0U1RRE5 68 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 FAM24AA6NFZ4 105 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 CAMLGP49069 296 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 CLINT1Q14677 625 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 MORN5Q5VZ52 161 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 Q6ZRG5 221 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 ZNF575Q86XF7 245 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 ZNRF2Q8NHG8 242 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 RNF141Q8WVD5 230 aa13.84□□□□□ -0.19
COL9A3-210ENST00000472880 PARD6GQ9BYG4 376 aaPredicted RBP13.84□□□□□ -0.19
COL9A3-210ENST00000472880 LYRM2Q9NU23 88 aaPredicted RBP13.84□□□□□ -0.19
COL9A3-210ENST00000472880 CST7O76096 145 aa13.83□□□□□ -0.2
COL9A3-210ENST00000472880 SIX6O95475 246 aa13.83□□□□□ -0.2
COL9A3-210ENST00000472880 IGLC2P0DOY2 106 aa13.83□□□□□ -0.2
COL9A3-210ENST00000472880 GFI1BQ5VTD9 330 aa13.83□□□□□ -0.2
COL9A3-210ENST00000472880 CCDC28AQ8IWP9 274 aa13.83□□□□□ -0.2
COL9A3-210ENST00000472880 PRAC2D3DTV9 90 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 KIR3DS1Q14943 382 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 OR1L4Q8NGR5 311 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 NMES1Q9C002 83 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 DNAJC4Q9NNZ3 241 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 UQCC1Q9NVA1 299 aa13.82□□□□□ -0.2
COL9A3-210ENST00000472880 IGSF23A1L1A6 192 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 J3KRW8 73 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 LEPP41159 167 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 SULT1A1P50225 295 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 GUK1Q16774 197 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 MIC13Q5XKP0 118 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 C6orf223Q8N319 242 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 TMEM252Q8N6L7 170 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 PFDN5Q99471 154 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 LINC00588Q9Y4M8 146 aa13.81□□□□□ -0.2
COL9A3-210ENST00000472880 SNURFLB1AK76 121 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 H3BQ15 152 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 RLN2P04090 185 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 TNP2Q05952 138 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 OR5I1Q13606 314 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 SAT2Q96F10 170 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-210ENST00000472880 WDR83OSQ9Y284 106 aa13.8□□□□□ -0.2
COL9A3-210ENST00000472880 UBE2L5PA0A1B0GUS4 154 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 SSNA1O43805 119 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 S100A11P31949 105 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 BAXQ07812 192 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 VWC2Q2TAL6 325 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 SSX7Q7RTT5 188 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 STX12Q86Y82 276 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 GNPNAT1Q96EK6 184 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-210ENST00000472880 ODF3Q96PU9 254 aa13.79□□□□□ -0.2
COL9A3-210ENST00000472880 TRAV26-1A0A087WT03 109 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 TRAV5A0A0B4J249 113 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 GAGE12BA1L429 117 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 NPIPB6E9PJ23 425 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 GAGE7O76087 117 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 GAGE12FP0CL80 117 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 GAGE12GP0CL81 117 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 GAGE12IP0CL82 117 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 M6PRP20645 277 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 H2BFSP57053 126 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 HBG1P69891 147 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 HBG2P69892 147 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 CYCSP99999 105 aaKnown RBP13.78□□□□□ -0.2
COL9A3-210ENST00000472880 LRRC37A5PQ49AS3 106 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 LINC00612Q8N6U2 182 aa13.78□□□□□ -0.2
COL9A3-210ENST00000472880 TRAV12-3A0A0B4J271 114 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 ZNF253O75346 499 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 PTTG1O95997 202 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 SLC39A9Q9NUM3 307 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 ZNF586Q9NXT0 402 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 OR5AC2Q9NZP5 309 aa13.77□□□□□ -0.21
COL9A3-210ENST00000472880 C16orf90A8MZG2 172 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 E5RGE8 158 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 H0YIZ8 118 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 CT45A10P0DMU9 189 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 RPL29P47914 159 aaKnown RBP13.76□□□□□ -0.21
COL9A3-210ENST00000472880 RXFP4Q8TDU9 374 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 MRPL53Q96EL3 112 aaKnown RBP13.76□□□□□ -0.21
COL9A3-210ENST00000472880 PYGO2Q9BRQ0 406 aa13.76□□□□□ -0.21
COL9A3-210ENST00000472880 A0A0J9YY99 117 aa13.75□□□□□ -0.21
COL9A3-210ENST00000472880 ATP6V1FQ16864 119 aa13.75□□□□□ -0.21
COL9A3-210ENST00000472880 TTC32Q5I0X7 151 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms