RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 UHRF2Q96PU4 802 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 PSMG3Q9BT73 122 aaPredicted RBP3.58□□□□□ -1.84
SF3B1-208ENST00000470268 SLC39A9Q9NUM3 307 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 MRPL27Q9P0M9 148 aaKnown RBP3.58□□□□□ -1.84
SF3B1-208ENST00000470268 DOK5Q9P104 306 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 CARHSP1Q9Y2V2 147 aaKnown RBP3.58□□□□□ -1.84
SF3B1-208ENST00000470268 IGHV3OR16-13A0A075B7E8 117 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 IGHV3-49A0A0A0MS15 119 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 IGHV3-74A0A0B4J1X5 117 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 TMEM213A2RRL7 107 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 MAP1LC3B2A6NCE7 125 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 NDUFA4O00483 81 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 RAB5CP51148 216 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 RAB5BP61020 215 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 LYZP61626 148 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 SELENOTP62341 195 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 RAB31Q13636 194 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 RNF212Q495C1 297 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 LEMD1Q68G75 181 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 C12orf54Q6X4T0 127 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 SVBPQ8N300 66 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 C3orf56Q8N813 242 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 OR10G4Q8NGN3 311 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 OR10G9Q8NGN4 311 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 OR10G7Q8NGN6 311 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 OR1B1Q8NGR6 318 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 Q8WTZ3 238 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 ISOC2Q96AB3 205 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 PBDC1Q9BVG4 233 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 SEC11CQ9BY50 192 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 MAP1LC3BQ9GZQ8 125 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 TIMM9Q9Y5J7 89 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 SELENOKQ9Y6D0 94 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 DNHD1Q96M86 4753 aa3.58□□□□□ -1.84
SF3B1-208ENST00000470268 TRAV5A0A0B4J249 113 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 IGHV3-66A0A0C4DH42 116 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 A0A1B0GV90 55 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 C5orf52A6NGY3 159 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 ZNF727A8MUV8 499 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 C17orf112F2Z3M2 114 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 SRP19P09132 144 aaKnown RBP3.57□□□□□ -1.84
SF3B1-208ENST00000470268 PRB4P10163 310 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-208ENST00000470268 UBE2G2P60604 165 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 SERF2P84101 59 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 ZNF709Q8N972 641 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 DPF1Q92782 380 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 PFDN5Q99471 154 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 TCEAL7Q9BRU2 100 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 SLC35B3Q9H1N7 401 aa3.57□□□□□ -1.84
SF3B1-208ENST00000470268 A8MWP6 167 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 M0R036 132 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 LGALS9O00182 355 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 BUB3O43684 328 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 HYPMO75409 117 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 OR5G3P0C626 314 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 BCL2P10415 239 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 FOLR2P14207 255 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CRYBB3P26998 211 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 MYCNOSP40205 109 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CDKN1BP46527 198 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 RIPPLY3P57055 190 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CD81P60033 236 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 DEFA6Q01524 100 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 PEA15Q15121 130 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 FAM106AQ4KMX7 169 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 ZNF506Q5JVG8 444 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 FAM78BQ5VT40 261 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 PET117Q6UWS5 81 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 MIR17HGQ75NE6 70 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 LINC00305Q7Z4B0 112 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 OR9G4Q8NGQ1 327 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 MBD3L1Q8WWY6 194 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C17orf77Q96MU5 243 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 SLC25A39Q9BZJ4 359 aaPredicted RBP3.56□□□□□ -1.84
SF3B1-208ENST00000470268 DNAJC4Q9NNZ3 241 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 DAZ1Q9NQZ3 744 aaKnown RBP3.56□□□□□ -1.84
SF3B1-208ENST00000470268 VWFP04275 2813 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 ANK2Q01484 3957 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 COL6A5A8TX70 2615 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 IGHV7-4-1A0A0J9YVY3 117 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C7orf77A4D0Y5 90 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C2orf70A6NJV1 201 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 COLCA2A8K830 154 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C1orf196B1AJZ1 125 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 H3BQ15 152 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 H3BRN7 92 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 K7EMT4 169 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CHEK1O14757 476 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 MRPS12O15235 138 aaKnown RBP3.56□□□□□ -1.84
SF3B1-208ENST00000470268 COX7A2P2O60397 106 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 PAGE4O60829 102 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 SCGB2A1O75556 95 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CSN3P07498 182 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 ARL14EPLP0DKL9 152 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C8orf88P0DMB2 117 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 CBLN1P23435 193 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 NPPCP23582 126 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 ATP5G3P48201 142 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 SOHLH1Q5JUK2 328 aa3.56□□□□□ -1.84
SF3B1-208ENST00000470268 C10orf113Q5VZT2 155 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms