RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SULT1A1P50225 295 aa12.37□□□□□ -0.43
COL7A1-206ENST00000466591 OR5I1Q13606 314 aa12.37□□□□□ -0.43
COL7A1-206ENST00000466591 TMEM37Q8WXS4 190 aa12.37□□□□□ -0.43
COL7A1-206ENST00000466591 GPN1Q9HCN4 374 aaPredicted RBP12.37□□□□□ -0.43
COL7A1-206ENST00000466591 TIMM9Q9Y5J7 89 aa12.37□□□□□ -0.43
COL7A1-206ENST00000466591 DNAH6Q9C0G6 4158 aa12.37□□□□□ -0.43
COL7A1-206ENST00000466591 SLC17A3O00476 420 aa12.36□□□□□ -0.43
COL7A1-206ENST00000466591 MRPS12O15235 138 aaKnown RBP12.36□□□□□ -0.43
COL7A1-206ENST00000466591 RTL8CO15255 209 aa12.36□□□□□ -0.43
COL7A1-206ENST00000466591 RLN2P04090 185 aa12.36□□□□□ -0.43
COL7A1-206ENST00000466591 FGF7P21781 194 aa12.36□□□□□ -0.43
COL7A1-206ENST00000466591 PARD6GQ9BYG4 376 aaPredicted RBP12.36□□□□□ -0.43
COL7A1-206ENST00000466591 SLC39A9Q9NUM3 307 aa12.36□□□□□ -0.43
COL7A1-206ENST00000466591 GFI1BQ5VTD9 330 aa12.35□□□□□ -0.43
COL7A1-206ENST00000466591 MORN5Q5VZ52 161 aa12.35□□□□□ -0.43
COL7A1-206ENST00000466591 LYRM2Q9NU23 88 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-206ENST00000466591 WDR83OSQ9Y284 106 aa12.35□□□□□ -0.43
COL7A1-206ENST00000466591 TRAV5A0A0B4J249 113 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 TRAV12-3A0A0B4J271 114 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 PRAC2D3DTV9 90 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 H3BQ15 152 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 IGLC2P0DOY2 106 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 RAB32Q13637 225 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 ATP6V1FQ16864 119 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 ENKURQ8TC29 256 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 AAMDCQ9H7C9 122 aa12.34□□□□□ -0.43
COL7A1-206ENST00000466591 GAGE12BA1L429 117 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 GAGE7O76087 117 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 GAGE12FP0CL80 117 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 GAGE12GP0CL81 117 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 GAGE12IP0CL82 117 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 RPL29P47914 159 aaKnown RBP12.33□□□□□ -0.44
COL7A1-206ENST00000466591 TMEM252Q8N6L7 170 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 RNASE8Q8TDE3 154 aaKnown RBP12.33□□□□□ -0.44
COL7A1-206ENST00000466591 BLNKQ8WV28 456 aa12.33□□□□□ -0.44
COL7A1-206ENST00000466591 GNPNAT1Q96EK6 184 aaPredicted RBP12.33□□□□□ -0.44
COL7A1-206ENST00000466591 IGSF23A1L1A6 192 aa12.32□□□□□ -0.44
COL7A1-206ENST00000466591 PLAC8L1A1L4L8 177 aa12.32□□□□□ -0.44
COL7A1-206ENST00000466591 Q6ZR54 194 aa12.32□□□□□ -0.44
COL7A1-206ENST00000466591 S100ZQ8WXG8 99 aa12.32□□□□□ -0.44
COL7A1-206ENST00000466591 HECTD4Q9Y4D8 3996 aa12.32□□□□□ -0.44
COL7A1-206ENST00000466591 A0A1B0GVY2 172 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 MPDU1O75352 247 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 MED14OSP0DP75 135 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 KIR3DS1Q14943 382 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 RNF141Q8WVD5 230 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 ODF3Q96PU9 254 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 PYGO2Q9BRQ0 406 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 SLC25A31Q9H0C2 315 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 ZNF586Q9NXT0 402 aa12.31□□□□□ -0.44
COL7A1-206ENST00000466591 TRAV26-1A0A087WT03 109 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 ZNF253O75346 499 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 CT45A10P0DMU9 189 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 HIST1H1EP10412 219 aaKnown RBP12.3□□□□□ -0.44
COL7A1-206ENST00000466591 M6PRP20645 277 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 VWC2Q2TAL6 325 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 LRRC37A5PQ49AS3 106 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 SAT2Q96F10 170 aaPredicted RBP12.3□□□□□ -0.44
COL7A1-206ENST00000466591 KCNIP2Q9NS61 270 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 PRELID1Q9Y255 219 aa12.3□□□□□ -0.44
COL7A1-206ENST00000466591 TRGV2A0A075B6R0 118 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 A0A0J9YY99 117 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 NBDYA0A0U1RRE5 68 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 NPIPB6E9PJ23 425 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 SLC25A5P05141 298 aaKnown RBP12.29□□□□□ -0.44
COL7A1-206ENST00000466591 SSX7Q7RTT5 188 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 THAP6Q8TBB0 222 aa12.29□□□□□ -0.44
COL7A1-206ENST00000466591 MRPL53Q96EL3 112 aaKnown RBP12.29□□□□□ -0.44
COL7A1-206ENST00000466591 TRBV19A0A075B6N1 114 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 C7orf71A4D174 169 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 GPX1P07203 203 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 TMEM78Q5T7P6 136 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 C6orf223Q8N319 242 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 ZNF680Q8NEM1 530 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 OR5C1Q8NGR4 320 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 NPCDR1Q9BY65 106 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 TMEM14CQ9P0S9 112 aa12.28□□□□□ -0.44
COL7A1-206ENST00000466591 E5RGE8 158 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 C17orf112F2Z3M2 114 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 M0R3E3 92 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 PYYP10082 97 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 RNASE4P34096 147 aaKnown RBP12.27□□□□□ -0.45
COL7A1-206ENST00000466591 ERCC8Q13216 396 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 PDE6HQ13956 83 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 FAM122CQ6P4D5 195 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 C11orf1Q9H5F2 150 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 LINC00588Q9Y4M8 146 aa12.27□□□□□ -0.45
COL7A1-206ENST00000466591 ASAH1Q13510 395 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 ICAM4Q14773 271 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 TTC32Q5I0X7 151 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 EXOC3-AS1Q8N2X6 119 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 ZNRF2Q8NHG8 242 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 LINC00477Q96M19 166 aa12.26□□□□□ -0.45
COL7A1-206ENST00000466591 TRGV1A0A0A0MS02 117 aa12.25□□□□□ -0.45
COL7A1-206ENST00000466591 RGS13O14921 159 aa12.25□□□□□ -0.45
COL7A1-206ENST00000466591 SIX6O95475 246 aa12.25□□□□□ -0.45
COL7A1-206ENST00000466591 CSN1S1P47710 185 aa12.25□□□□□ -0.45
COL7A1-206ENST00000466591 CYCSP99999 105 aaKnown RBP12.25□□□□□ -0.45
COL7A1-206ENST00000466591 NHLH2Q02577 135 aa12.25□□□□□ -0.45
COL7A1-206ENST00000466591 GCSAMLQ5JQS6 135 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms