RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BCL2L11O43521 198 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF253O75346 499 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 MBP02144 154 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 HIST1H1EP10412 219 aaKnown RBP8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 HLA-DRB4P13762 266 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 TAS2R45P59539 299 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 DEFB135Q30KP9 77 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 KHDC3LQ587J8 217 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 IGFL4Q6B9Z1 124 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 FOXI2Q6ZQN5 318 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 RNF182Q8N6D2 247 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 SAT2Q96F10 170 aaPredicted RBP8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 HYLS1Q96M11 299 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 OR51M1Q9H341 326 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 HLA-DRB4X5D2U9 266 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 H3BMM0 161 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 OR7C2O60412 319 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 PFDN1O60925 122 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 SPP1P10451 314 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 HLA-DMBP28068 263 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 DEFB1P60022 68 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 CD300CQ08708 224 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 PDE6HQ13956 83 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 PSG3Q16557 428 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 LGALSLQ3ZCW2 172 aaPredicted RBP8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 GDF5OSQ5U4N7 250 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 FAM122CQ6P4D5 195 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 TMUB2Q71RG4 321 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF738Q8NE65 137 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 PHLDA1Q8WV24 401 aaPredicted RBP8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 FXYD5Q96DB9 178 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF503Q96F45 646 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 PAXXQ9BUH6 204 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 HSPG2P98160 4391 aa8.67□□□□□ -1.02
SQSTM1-206ENST00000466342 A0A0J9YX75 114 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 F6UB75 175 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 NDUFB4O95168 129 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 OR10J4P0C629 311 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 CDC34P49427 236 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 TMEM41BQ5BJD5 291 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 EBLN2Q6P2I7 272 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 MORN3Q6PF18 240 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 BLNKQ8WV28 456 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 RNF141Q8WVD5 230 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 CLUHP3Q96NS8 147 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF471Q9BX82 626 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 CLEC5AQ9NY25 188 aa8.66□□□□□ -1.02
SQSTM1-206ENST00000466342 EIF3GO75821 320 aaKnown RBP eCLIP8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 NBEAP1P0C6P0 100 aa8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 EIF5AP63241 154 aaKnown RBP8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 UBE2L3P68036 154 aaKnown RBP8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 PSG9Q00887 426 aa8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 PQLC2Q6ZP29 291 aa8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 RAB24Q969Q5 203 aa8.65□□□□□ -1.02
SQSTM1-206ENST00000466342 A8MTW9 85 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 HMGB3O15347 200 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 CA1P00915 261 aaPredicted RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 SEC11BP0C7V7 166 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 STAG3L2P0CL84 134 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 STAG3L3P0CL85 134 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 TPT1P13693 172 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 C4BPBP20851 252 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 NUTF2P61970 127 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 ZFP69Q49AA0 526 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 AKR1C8PQ5T2L2 129 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 OR4B1Q8NGF8 309 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 STOML3Q8TAV4 291 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 RPUSD4Q96CM3 377 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 MRPL53Q96EL3 112 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 RARRES2Q99969 163 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 ACTR3CQ9C0K3 210 aaPredicted RBP8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 AAMDCQ9H7C9 122 aa8.64□□□□□ -1.03
SQSTM1-206ENST00000466342 ZNF705FA8MVS1 300 aaPredicted RBP8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 DUSP14O95147 198 aaKnown RBP8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 IGKV3-20P01619 116 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 GIG44P09565 113 aaPredicted RBP8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 CNN1P51911 297 aaKnown RBP8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 BAP18Q8IXM2 172 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 EXOC3-AS1Q8N2X6 119 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 OR8A1Q8NGG7 326 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 PHYHIPLQ96FC7 376 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 PRELID1Q9Y255 219 aa8.63□□□□□ -1.03
SQSTM1-206ENST00000466342 CTXND1A0A1B0GTU2 59 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 PRSS29PA6NIE9 313 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 ZNF705DP0CH99 300 aaPredicted RBP8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 ZNF705BP0CI00 300 aaPredicted RBP8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 TCTAP57738 103 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 HIST1H1AQ02539 215 aaPredicted RBP8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 ICAM4Q14773 271 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 ZNF726P1Q15940 193 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 SSX7Q7RTT5 188 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 LYPD1Q8N2G4 141 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 C9orf62Q8N4C0 152 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 C1QTNF4Q9BXJ3 329 aa8.62□□□□□ -1.03
SQSTM1-206ENST00000466342 UMAD1C9J7I0 102 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 PRAC2D3DTV9 90 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 M0R3E3 92 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 CXorf1O96002 111 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 PRB4P10163 310 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms