RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 CTXND1A0A1B0GTU2 59 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 F6UB75 175 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 SNRPCP09234 159 aaKnown RBP12.44□□□□□ -0.42
VPS52-215ENST00000464425 RAB5CP51148 216 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 PSG9Q00887 426 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 ZNF726P1Q15940 193 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 OR11H2Q8NH07 326 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 PHYHIPLQ96FC7 376 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 RARRES2Q99969 163 aa12.44□□□□□ -0.42
VPS52-215ENST00000464425 SAV1Q9H4B6 383 aaPredicted RBP12.44□□□□□ -0.42
VPS52-215ENST00000464425 NDUFB4O95168 129 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 CXorf1O96002 111 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 OR10J4P0C629 311 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 HLA-DRB4P13762 266 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 CASC10Q5T4H9 136 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 FOXI2Q6ZQN5 318 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 RNF182Q8N6D2 247 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 SUN5Q8TC36 379 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 HLA-DRB4X5D2U9 266 aa12.43□□□□□ -0.42
VPS52-215ENST00000464425 SLC17A3O00476 420 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 HMGB3O15347 200 aaKnown RBP12.42□□□□□ -0.42
VPS52-215ENST00000464425 ARL14EPLP0DKL9 152 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 UBE2L3P68036 154 aaKnown RBP12.42□□□□□ -0.42
VPS52-215ENST00000464425 PSG3Q16557 428 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 EBLN2Q6P2I7 272 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 SSX7Q7RTT5 188 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 LYPD1Q8N2G4 141 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 OR4B1Q8NGF8 309 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 BLNKQ8WV28 456 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 BOLA1Q9Y3E2 137 aa12.42□□□□□ -0.42
VPS52-215ENST00000464425 H3BTX0 84 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 BOLA2-SMG1P6H3BVE0 249 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 EIF3GO75821 320 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS52-215ENST00000464425 GCHFRP30047 84 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 FHITP49789 147 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 SULT1A2P50226 295 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 FXYD7P58549 80 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 NUTF2P61970 127 aaKnown RBP12.41□□□□□ -0.42
VPS52-215ENST00000464425 MBD3L1Q8WWY6 194 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 XCL2Q9UBD3 114 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 PRELID1Q9Y255 219 aa12.41□□□□□ -0.42
VPS52-215ENST00000464425 PRB4P10163 310 aaPredicted RBP12.4□□□□□ -0.42
VPS52-215ENST00000464425 HLA-DMBP28068 263 aa12.4□□□□□ -0.42
VPS52-215ENST00000464425 MRPL53Q96EL3 112 aaKnown RBP12.4□□□□□ -0.42
VPS52-215ENST00000464425 AAMDCQ9H7C9 122 aa12.4□□□□□ -0.42
VPS52-215ENST00000464425 TMEM167BQ9NRX6 74 aa12.4□□□□□ -0.42
VPS52-215ENST00000464425 A0A0J9YX75 114 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 MAP1LC3B2A6NCE7 125 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 DEFB4AO15263 64 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 ZNF705DP0CH99 300 aaPredicted RBP12.39□□□□□ -0.43
VPS52-215ENST00000464425 ZNF705BP0CI00 300 aaPredicted RBP12.39□□□□□ -0.43
VPS52-215ENST00000464425 CSNK1G2-AS1Q8NCQ2 148 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 ZNF738Q8NE65 137 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 IL17DQ8TAD2 202 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 FAM213BQ8TBF2 198 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 CLUHP3Q96NS8 147 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 MAP1LC3BQ9GZQ8 125 aa12.39□□□□□ -0.43
VPS52-215ENST00000464425 H2AFB1P0C5Y9 115 aa12.38□□□□□ -0.43
VPS52-215ENST00000464425 RANP62826 216 aaKnown RBP12.38□□□□□ -0.43
VPS52-215ENST00000464425 RPUSD4Q96CM3 377 aaKnown RBP12.38□□□□□ -0.43
VPS52-215ENST00000464425 SLC35B3Q9H1N7 401 aa12.38□□□□□ -0.43
VPS52-215ENST00000464425 TRAV1-1A0A0B4J248 108 aa12.37□□□□□ -0.43
VPS52-215ENST00000464425 EXOC3-AS1Q8N2X6 119 aa12.37□□□□□ -0.43
VPS52-215ENST00000464425 SFT2D1Q8WV19 159 aa12.37□□□□□ -0.43
VPS52-215ENST00000464425 C1QTNF4Q9BXJ3 329 aa12.37□□□□□ -0.43
VPS52-215ENST00000464425 Q9H3A6 140 aa12.37□□□□□ -0.43
VPS52-215ENST00000464425 CNN1P51911 297 aaKnown RBP12.36□□□□□ -0.43
VPS52-215ENST00000464425 FGF8P55075 233 aaPredicted RBP12.36□□□□□ -0.43
VPS52-215ENST00000464425 ICAM4Q14773 271 aa12.36□□□□□ -0.43
VPS52-215ENST00000464425 ALKAL2Q6UX46 152 aa12.36□□□□□ -0.43
VPS52-215ENST00000464425 ARL6IP6Q8N6S5 226 aa12.36□□□□□ -0.43
VPS52-215ENST00000464425 OTORQ9NRC9 128 aa12.36□□□□□ -0.43
VPS52-215ENST00000464425 A8MTW9 85 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 ZNF705FA8MVS1 300 aaPredicted RBP12.35□□□□□ -0.43
VPS52-215ENST00000464425 DUSP14O95147 198 aaKnown RBP12.35□□□□□ -0.43
VPS52-215ENST00000464425 PMS2P11Q13670 270 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 FAM74A1Q5RGS3 127 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 OR8A1Q8NGG7 326 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 RXFP4Q8TDU9 374 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 TMPRSS5Q9H3S3 457 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 X6R8D5 127 aa12.35□□□□□ -0.43
VPS52-215ENST00000464425 KMT2CQ8NEZ4 4911 aaKnown RBP12.34□□□□□ -0.43
VPS52-215ENST00000464425 IGHV4-28A0A0C4DH34 117 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 A0A1W2PRE2 83 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 PGPA6NDG6 321 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 ZNF705EA8MWA4 302 aaPredicted RBP12.34□□□□□ -0.43
VPS52-215ENST00000464425 TEX46H3BTG2 121 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 M0R3E3 92 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 HIST1H1AQ02539 215 aaPredicted RBP12.34□□□□□ -0.43
VPS52-215ENST00000464425 IQCF2Q8IXL9 164 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 Q8NAQ8 132 aa12.34□□□□□ -0.43
VPS52-215ENST00000464425 NKX6-2Q9C056 277 aaPredicted RBP12.34□□□□□ -0.43
VPS52-215ENST00000464425 IGHV3OR16-12A0A075B7B8 117 aa12.33□□□□□ -0.44
VPS52-215ENST00000464425 CXorf65A6NEN9 183 aa12.33□□□□□ -0.44
VPS52-215ENST00000464425 PRAC2D3DTV9 90 aa12.33□□□□□ -0.44
VPS52-215ENST00000464425 RBMY1A1P0DJD3 496 aaKnown RBP12.33□□□□□ -0.44
VPS52-215ENST00000464425 RBMY1CP0DJD4 496 aa12.33□□□□□ -0.44
VPS52-215ENST00000464425 CSN1S1P47710 185 aa12.33□□□□□ -0.44
VPS52-215ENST00000464425 RBMY1FQ15415 496 aaKnown RBP12.33□□□□□ -0.44
VPS52-215ENST00000464425 TEX261Q6UWH6 196 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms