RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 SNRPD2P62316 118 aaKnown RBP2.13□□□□□ -2.07
VPS41-210ENST00000462429 IFITM2Q01629 132 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 BAMBIQ13145 260 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 SLC9A3R2Q15599 337 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 HMGN3Q15651 99 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 MSMO1Q15800 293 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 IAH1Q2TAA2 248 aaPredicted RBP2.13□□□□□ -2.07
VPS41-210ENST00000462429 PIGYQ3MUY2 71 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 PDZD11Q5EBL8 140 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 AADACL3Q5VUY0 350 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 OR2T2Q6IF00 324 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 MYO7BQ6PIF6 2116 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 SSX7Q7RTT5 188 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 TCF23Q7RTU1 214 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 STX12Q86Y82 276 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 BAP18Q8IXM2 172 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 LINC00304Q8N9R0 145 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 LFNGQ8NES3 379 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 OR11L1Q8NGX0 322 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 STOML3Q8TAV4 291 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 SLC25A40Q8TBP6 338 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 ARL11Q969Q4 196 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 GNPNAT1Q96EK6 184 aaPredicted RBP2.13□□□□□ -2.07
VPS41-210ENST00000462429 AQP10Q96PS8 301 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 CIB3Q96Q77 187 aaPredicted RBP2.13□□□□□ -2.07
VPS41-210ENST00000462429 PBDC1Q9BVG4 233 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 OR2J1Q9GZK6 312 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 TMEM222Q9H0R3 208 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 OR51I2Q9H344 312 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 SMDT1Q9H4I9 107 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 TAF9BQ9HBM6 251 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 TNFSF18Q9UNG2 199 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 PRELID3BQ9Y3B1 194 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 KMT2EQ8IZD2 1858 aa2.13□□□□□ -2.07
VPS41-210ENST00000462429 PRUNE2Q8WUY3 3088 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 MED13Q9UHV7 2174 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 ZNF407Q9C0G0 2248 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IGHV3-21A0A0B4J1V1 117 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IGHV3-43A0A0B4J1X8 118 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IGKV1-12A0A0C4DH73 117 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 UMAD1C9J7I0 102 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 I3L521 148 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 NDUFA2O43678 99 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 DEDDO75618 318 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 SIX6O95475 246 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 OR2H2O95918 312 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 HAND1O96004 215 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IFNA5P01569 189 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IGKV1D-12P01611 117 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 IGKV4-1P06312 121 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 CGB3P0DN86 165 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 CGB7P0DN87 165 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 GABRA2P47869 451 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 SULT1A2P50226 295 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 AKR1C2P52895 323 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 TAS2R30P59541 319 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 HLA-DRB3P79483 266 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 TMEM249Q2WGJ8 235 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 LCE1CQ5T751 118 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 LCE1BQ5T7P3 118 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 ALKAL2Q6UX46 152 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 DPPA3Q6W0C5 159 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 COMMD7Q86VX2 200 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 EIF4E3Q8N5X7 224 aaKnown RBP2.12□□□□□ -2.07
VPS41-210ENST00000462429 OR4A5Q8NH83 315 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 ZNRF2Q8NHG8 242 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 LSM10Q969L4 123 aaKnown RBP2.12□□□□□ -2.07
VPS41-210ENST00000462429 OR51B6Q9H340 312 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.12□□□□□ -2.07
VPS41-210ENST00000462429 COA4Q9NYJ1 87 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 TMEM56-RWDD3S4R434 201 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 TRIOO75962 3097 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 TNRC6AQ8NDV7 1962 aaKnown RBP2.12□□□□□ -2.07
VPS41-210ENST00000462429 MED12Q93074 2177 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 DNAH14Q0VDD8 3507 aa2.12□□□□□ -2.07
VPS41-210ENST00000462429 NCKAP5O14513 1909 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 IGLV3-9A0A075B6K5 115 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 TRGV10A0A0A0MS01 117 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 TRAV38-1A0A0B4J264 116 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 IGHV1-18A0A0C4DH31 117 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 hADV38S2A0JD32 116 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 LEUTXA8MZ59 168 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 H3BQ85 93 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 ITGB1BP1O14713 200 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 FGF16O43320 207 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 SYNGR1O43759 233 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 YPEL1O60688 119 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 PGLYRP1O75594 196 aaPredicted RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 PRH1P02810 166 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 SCTP09683 121 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 CXCL2P19875 107 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 MP68P56378 58 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 TMEM33P57088 247 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 UBE2G2P60604 165 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 SUPT4H1P63272 117 aaKnown RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 SERF2P84101 59 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 TNFAIP6P98066 277 aaPredicted RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 DEFA6Q01524 100 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 PEA15Q15121 130 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 Q5BKY6 102 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms