RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 EDA2RQ9HAV5 297 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 KANTRA0A1W2PQU2 76 aa16.66■□□□□ 0.26
CCDC28B-203ENST00000461819 CYTL1Q9NRR1 136 aa16.66■□□□□ 0.26
CCDC28B-203ENST00000461819 PPP1R14DQ9NXH3 145 aa16.66■□□□□ 0.26
CCDC28B-203ENST00000461819 PQLC2Q6ZP29 291 aa16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 OR10J6PQ8NGY7 276 aa16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 MRPL53Q96EL3 112 aaKnown RBP16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 ZNF503Q96F45 646 aa16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 PRELID1Q9Y255 219 aa16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 DNAH7Q8WXX0 4024 aa16.65■□□□□ 0.26
CCDC28B-203ENST00000461819 A8MTW9 85 aa16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 HMGB3O15347 200 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 BCL2L11O43521 198 aa16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 PFDN1O60925 122 aa16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 EXOC3-AS1Q8N2X6 119 aa16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 RPP25LQ8N5L8 163 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 PHYHIPLQ96FC7 376 aa16.64■□□□□ 0.25
CCDC28B-203ENST00000461819 A0A0J9YWU9 116 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 PRAC2D3DTV9 90 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 ICAM4Q14773 271 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 AKR1C8PQ5T2L2 129 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 AMTNQ6UX39 209 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 CSNK1G2-AS1Q8NCQ2 148 aa16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 ZNF471Q9BX82 626 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 ACTR3CQ9C0K3 210 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-203ENST00000461819 M0R3E3 92 aa16.62■□□□□ 0.25
CCDC28B-203ENST00000461819 SPINK13Q1W4C9 94 aa16.62■□□□□ 0.25
CCDC28B-203ENST00000461819 RAB24Q969Q5 203 aa16.62■□□□□ 0.25
CCDC28B-203ENST00000461819 BOLA2-SMG1P6H3BVE0 249 aa16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 M0R2Z0 102 aa16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 ARL14EPLP0DKL9 152 aa16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 RANP62826 216 aaKnown RBP16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 TMUB2Q71RG4 321 aa16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 MUC7Q8TAX7 377 aa16.61■□□□□ 0.25
CCDC28B-203ENST00000461819 C1QBP02746 253 aa16.6■□□□□ 0.25
CCDC28B-203ENST00000461819 AMBPP02760 352 aa16.6■□□□□ 0.25
CCDC28B-203ENST00000461819 STAG3L2P0CL84 134 aa16.6■□□□□ 0.25
CCDC28B-203ENST00000461819 STAG3L3P0CL85 134 aa16.6■□□□□ 0.25
CCDC28B-203ENST00000461819 IGHV3OR16-12A0A075B7B8 117 aa16.59■□□□□ 0.25
CCDC28B-203ENST00000461819 ZNF705EA8MWA4 302 aaPredicted RBP16.59■□□□□ 0.25
CCDC28B-203ENST00000461819 LYPD1Q8N2G4 141 aa16.59■□□□□ 0.25
CCDC28B-203ENST00000461819 Q9H3A6 140 aa16.59■□□□□ 0.25
CCDC28B-203ENST00000461819 GOLT1BQ9Y3E0 138 aa16.59■□□□□ 0.25
CCDC28B-203ENST00000461819 A0A1B0GVG6 124 aa16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 INSP01308 110 aa16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 MIFP14174 115 aa16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 EIF5AP63241 154 aaKnown RBP16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 IGF2BP2-AS1Q96M15 143 aa16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 X6R8D5 127 aa16.58■□□□□ 0.24
CCDC28B-203ENST00000461819 NPIPB6E9PJ23 425 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 CXorf1O96002 111 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 CSN1S1P47710 185 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 IQCF2Q8IXL9 164 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 BAP18Q8IXM2 172 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 HYLS1Q96M11 299 aa16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 C11orf68Q9H3H3 251 aaKnown RBP16.57■□□□□ 0.24
CCDC28B-203ENST00000461819 TRAV12-2A0A075B6T6 113 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 CTXND1A0A1B0GTU2 59 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 DEFB4AO15263 64 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 GCHFRP30047 84 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 ZNF705AQ6ZN79 300 aaPredicted RBP16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 SSX7Q7RTT5 188 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 Q8NAQ8 132 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 TMEM208Q9BTX3 173 aa16.56■□□□□ 0.24
CCDC28B-203ENST00000461819 IGKV2-40A0A087WW87 121 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 IGHV4-28A0A0C4DH34 117 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 IGKV2D-40P01614 121 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 TSPOP30536 169 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 CDKN1BP46527 198 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 FAM74A1Q5RGS3 127 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 IL17DQ8TAD2 202 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 OTORQ9NRC9 128 aa16.55■□□□□ 0.24
CCDC28B-203ENST00000461819 C3orf84H3BNL1 204 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 SEC11BP0C7V7 166 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 TPT1P13693 172 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 CD300CQ08708 224 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 ERCC8Q13216 396 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 ZNF726P1Q15940 193 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 LGALSLQ3ZCW2 172 aaPredicted RBP16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 TMEM167BQ9NRX6 74 aa16.54■□□□□ 0.24
CCDC28B-203ENST00000461819 CRXO43186 299 aaPredicted RBP16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 CT45A10P0DMU9 189 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 LEPP41159 167 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 ZFP69Q49AA0 526 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 TMEM78Q5T7P6 136 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 C1orf158Q8N1D5 194 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 CMTM2Q8TAZ6 248 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 RXFP4Q8TDU9 374 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 ODF3Q96PU9 254 aa16.53■□□□□ 0.24
CCDC28B-203ENST00000461819 PGPA6NDG6 321 aa16.52■□□□□ 0.24
CCDC28B-203ENST00000461819 ZFAND6Q6FIF0 208 aa16.52■□□□□ 0.24
CCDC28B-203ENST00000461819 LINC00477Q96M19 166 aa16.52■□□□□ 0.24
CCDC28B-203ENST00000461819 NEU1Q99519 415 aa16.52■□□□□ 0.24
CCDC28B-203ENST00000461819 RPH3ALQ9UNE2 315 aa16.52■□□□□ 0.24
CCDC28B-203ENST00000461819 SMIM9A6NGZ8 99 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 UMAD1C9J7I0 102 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 J3KRW8 73 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 RBMY1A1P0DJD3 496 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 RBMY1CP0DJD4 496 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 RBMY1FQ15415 496 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms