RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 C4orf3Q8WVX3 66 aa10.86□□□□□ -0.67
USP39-207ENST00000450066 WFDC12Q8WWY7 111 aa10.86□□□□□ -0.67
USP39-207ENST00000450066 TGIF2-C20orf24A0A0A6YYL0 155 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 A8MWP6 167 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 INAFM1C9JVW0 142 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 CXCL1P09341 107 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 HOXD3P31249 432 aaPredicted RBP10.85□□□□□ -0.67
USP39-207ENST00000450066 FLI1Q01543 452 aaPredicted RBP10.85□□□□□ -0.67
USP39-207ENST00000450066 IGFL4Q6B9Z1 124 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 Q71RC1 249 aaPredicted RBP10.85□□□□□ -0.67
USP39-207ENST00000450066 LINC01006Q8NI28 216 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 RNASE7Q9H1E1 156 aaKnown RBP10.85□□□□□ -0.67
USP39-207ENST00000450066 CLEC5AQ9NY25 188 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 BMI1P35226 326 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 FOXL1Q12952 345 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 IBA57Q5T440 356 aaKnown RBP10.85□□□□□ -0.67
USP39-207ENST00000450066 LCN12Q6JVE5 192 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 KCNIP4Q6PIL6 250 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 FAM231DQ6ZW35 169 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 PRNTQ86SH4 94 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 TMEM183AQ8IXX5 376 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 BIN3Q9NQY0 253 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 ZFP30Q9Y2G7 519 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 V9GYV3 84 aa10.85□□□□□ -0.67
USP39-207ENST00000450066 TRAV8-2A0A0B4J237 113 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 TMEM213A2RRL7 107 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 FBLL1A6NHQ2 334 aaKnown RBP10.84□□□□□ -0.67
USP39-207ENST00000450066 HLA-DMBP28068 263 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 C18orf65Q6ZTR6 163 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 C1QL4Q86Z23 238 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 MRPL53Q96EL3 112 aaKnown RBP10.84□□□□□ -0.67
USP39-207ENST00000450066 PYGO2Q9BRQ0 406 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 PSG8Q9UQ74 426 aa10.84□□□□□ -0.67
USP39-207ENST00000450066 NDUFA7O95182 113 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 SYNJ2BPP57105 145 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 KLF5Q13887 457 aaPredicted RBP10.83□□□□□ -0.68
USP39-207ENST00000450066 RNF182Q8N6D2 247 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 FAM210BQ96KR6 192 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 ZNF705FA8MVS1 300 aaPredicted RBP10.83□□□□□ -0.68
USP39-207ENST00000450066 KHDC1LQ5JSQ8 128 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 C16orf92Q96LL3 132 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 NRN1Q9NPD7 142 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 IL36BQ9NZH7 164 aa10.83□□□□□ -0.68
USP39-207ENST00000450066 LINC01619G3V211 115 aa10.82□□□□□ -0.68
USP39-207ENST00000450066 DEFB136Q30KP8 78 aa10.82□□□□□ -0.68
USP39-207ENST00000450066 KLHL30-AS1Q8NEE0 82 aa10.82□□□□□ -0.68
USP39-207ENST00000450066 IGKV2-40A0A087WW87 121 aaPredicted RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 RBAKDNA6NC62 111 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 SOCS3O14543 225 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 IGKV2D-40P01614 121 aaPredicted RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 EDN2P20800 178 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 FAM3BP58499 235 aaPredicted RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 RPL11P62913 178 aaKnown RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 PRR27Q6MZM9 219 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 OR11H1Q8NG94 326 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 OR1N2Q8NGR9 330 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 ZNF492Q9P255 531 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 A0A1W2PPQ1 181 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 PRB4P10163 310 aaPredicted RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 RPS10P46783 165 aaKnown RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 NUDT10Q8NFP7 164 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 DPF1Q92782 380 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 NUDT11Q96G61 164 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 BTF3L4Q96K17 158 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 MLXQ9UH92 298 aa10.81□□□□□ -0.68
USP39-207ENST00000450066 SETD2Q9BYW2 2564 aaPredicted RBP10.81□□□□□ -0.68
USP39-207ENST00000450066 ZNF705GA8MUZ8 300 aaPredicted RBP10.8□□□□□ -0.68
USP39-207ENST00000450066 TCF21O43680 179 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 SAPCD1Q5SSQ6 148 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 TCF24Q7RTU0 167 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 VGLL1Q99990 258 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 SETXQ7Z333 2677 aaKnown RBP10.8□□□□□ -0.68
USP39-207ENST00000450066 TRAV9-1A0A075B6T8 112 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 C19orf71A6NCJ1 209 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 C2orf70A6NJV1 201 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 PRAC2D3DTV9 90 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 CD28P10747 220 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 CBLN1P23435 193 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 SLURP1P55000 103 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 SAMD13Q5VXD3 122 aa10.8□□□□□ -0.68
USP39-207ENST00000450066 LINC00322Q6ZN03 302 aaPredicted RBP10.8□□□□□ -0.68
USP39-207ENST00000450066 C1orf196B1AJZ1 125 aa10.79□□□□□ -0.68
USP39-207ENST00000450066 GATCO43716 136 aaKnown RBP10.79□□□□□ -0.68
USP39-207ENST00000450066 CRLF1O75462 422 aa10.79□□□□□ -0.68
USP39-207ENST00000450066 COX8CQ7Z4L0 72 aa10.79□□□□□ -0.68
USP39-207ENST00000450066 ZC2HC1AQ96GY0 325 aa10.79□□□□□ -0.68
USP39-207ENST00000450066 TYMSP04818 313 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 GBGT1Q8N5D6 347 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 DAZAP1Q96EP5 407 aaKnown RBP10.78□□□□□ -0.68
USP39-207ENST00000450066 PRR25Q96S07 402 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 RNF114Q9Y508 228 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 TSSC4Q9Y5U2 329 aaPredicted RBP10.78□□□□□ -0.68
USP39-207ENST00000450066 SMIM27A0A1W2PRY6 76 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 P01737 135 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 C11orf44Q8N8P7 122 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 C20orf173Q96LM9 149 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 SRD5A3Q9H8P0 318 aa10.78□□□□□ -0.68
USP39-207ENST00000450066 FN1P02751 2386 aaKnown RBP10.78□□□□□ -0.68
USP39-207ENST00000450066 BAHCC1Q9P281 2608 aa10.77□□□□□ -0.68
USP39-207ENST00000450066 M0QZ24 198 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms