RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ARL14EPLP0DKL9 152 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 CCL3L1P16619 93 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BOP23527 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 NPPCP23582 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BBP33778 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 CXCL5P42830 114 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 REG1BP48304 166 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BDP58876 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HSPE1P61604 102 aaKnown RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 B2MP61769 119 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BCP62807 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 S100A12P80511 92 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 RPL18AQ02543 176 aaKnown RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 BSPH1Q075Z2 132 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 RAB31Q13636 194 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST2H2BEQ16778 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 PDZD11Q5EBL8 140 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 FAM78BQ5VT40 261 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 SPNS3Q6ZMD2 512 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 ZCCHC24Q8N2G6 241 aaKnown RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 C11orf72Q8NBR9 251 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 H1FXQ92522 213 aaKnown RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 CCL17Q92583 94 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 FRZBQ92765 325 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BHQ93079 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 RNF185Q96GF1 192 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 SLC35E1Q96K37 410 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 ZNF714Q96N38 554 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 WFIKKN1Q96NZ8 548 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BNQ99877 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BMQ99879 126 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 MRPL20Q9BYC9 149 aaKnown RBP2.82□□□□□ -1.96
VPS29-202ENST00000447578 NPVFQ9HCQ7 196 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 DYNLRB1Q9NP97 96 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 KCNIP2Q9NS61 270 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 PRO0461Q9UI25 63 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 PRNDQ9UKY0 176 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 XIRP2A4UGR9 3374 aa2.82□□□□□ -1.96
VPS29-202ENST00000447578 UNC80Q8N2C7 3258 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 SZT2Q5T011 3432 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TRBV24-1A0A075B6N3 115 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TEX50A0A1B0GTY4 177 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 MDFIC2A0A1B0GVS7 189 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 A6NDX4 124 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 PPP5D1E7EU14 171 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 H0YJW9 148 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 FOXH1O75593 365 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 MT-CO2P00403 227 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 GCGP01275 180 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 APOA2P02652 100 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 IGKV1-16P04430 117 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 PFN1P07737 140 aaKnown RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 SOD3P08294 240 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 SAA1P0DJI8 122 aaPredicted RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 GCHFRP30047 84 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 SRP14P37108 136 aaKnown RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 MYCNOSP40205 109 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 RHOBP62745 196 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 RPL31P62899 125 aaKnown RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 PRCDQ00LT1 54 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 MEF2CQ06413 473 aaPredicted RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 TNXAQ16473 311 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 PSG3Q16557 428 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TAL2Q16559 108 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TMEM249Q2WGJ8 235 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 SPATA31B1PQ5VZV4 182 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 LYPD2Q6UXB3 125 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 ZNF833PQ6ZTB9 187 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 MIR17HGQ75NE6 70 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 HIST3H2BBQ8N257 126 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 Q8N9W7 124 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR10W1Q8NGF6 305 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR4P4Q8NGL7 312 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR10D4PQ8NGN7 298 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR10X1Q8NGY0 326 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR2T10Q8NGZ9 312 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 OR4X1Q8NH49 305 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TMEM158Q8WZ71 300 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 LINC00574Q9H8X3 128 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TMEM14BQ9NUH8 114 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 TMEM106BQ9NUM4 274 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 FKBP11Q9NYL4 201 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 RPUSD1Q9UJJ7 312 aaKnown RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 ZNF257Q9Y2Q1 563 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 YTHDF2Q9Y5A9 579 aaKnown RBP2.81□□□□□ -1.96
VPS29-202ENST00000447578 LINC00312Q9Y6C7 94 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 ARHGAP21Q5T5U3 1957 aa2.81□□□□□ -1.96
VPS29-202ENST00000447578 DNAH14Q0VDD8 3507 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 CEP290O15078 2479 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 TRIOBPQ9H2D6 2365 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 DOCK10Q96BY6 2186 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 IGLV11-55A0A075B6I3 123 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 A0A0J9YXV3 536 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 LINC00587B1AMM8 73 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 E7EQL1 145 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 FNDC10F2Z333 226 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 K7EN84 100 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 GATCO43716 136 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 ENSAO43768 121 aaKnown RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms