RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 OR1L4Q8NGR5 311 aa14.62□□□□□ -0.07
SDC1-205ENST00000447124 RTL8CO15255 209 aa14.61□□□□□ -0.07
SDC1-205ENST00000447124 HTN1P15515 57 aa14.61□□□□□ -0.07
SDC1-205ENST00000447124 BAXQ07812 192 aa14.61□□□□□ -0.07
SDC1-205ENST00000447124 ATP6V1FQ16864 119 aa14.61□□□□□ -0.07
SDC1-205ENST00000447124 PXMP4Q9Y6I8 212 aa14.61□□□□□ -0.07
SDC1-205ENST00000447124 UPK1BO75841 260 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 CT45A10P0DMU9 189 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 FGF7P21781 194 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 NHLH2Q02577 135 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 LGALS9BQ3B8N2 356 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 STX12Q86Y82 276 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 DNAH11Q96DT5 4516 aa14.6□□□□□ -0.07
SDC1-205ENST00000447124 IGLV2-18A0A075B6J9 118 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 H0YIZ8 118 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 HBG1P69891 147 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 HBG2P69892 147 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 RNF212Q495C1 297 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 GCSAMLQ5JQS6 135 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 Q6ZR54 194 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 LINC00336Q6ZUF6 198 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 UBE2DNLQ8IWF7 75 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 OR10J6PQ8NGY7 276 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 PFDN5Q99471 154 aa14.59□□□□□ -0.07
SDC1-205ENST00000447124 GPN1Q9HCN4 374 aaPredicted RBP14.59□□□□□ -0.07
SDC1-205ENST00000447124 A0A1B0GVY2 172 aa14.58□□□□□ -0.08
SDC1-205ENST00000447124 GUK1Q16774 197 aa14.58□□□□□ -0.08
SDC1-205ENST00000447124 GFI1BQ5VTD9 330 aa14.58□□□□□ -0.08
SDC1-205ENST00000447124 RNASE8Q8TDE3 154 aaKnown RBP14.58□□□□□ -0.08
SDC1-205ENST00000447124 OR5AC2Q9NZP5 309 aa14.58□□□□□ -0.08
SDC1-205ENST00000447124 NACAE9PAV3 2078 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 PKHD1P08F94 4074 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 PKD1P98161 4303 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 TRBV19A0A075B6N1 114 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 CBY3A6NI87 242 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 F5H768 121 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 H7BYZ3 331 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 NDUFB4O95168 129 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 ENKURQ8TC29 256 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 C16orf74Q96GX8 76 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 C20orf144Q9BQM9 153 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 NOP10Q9NPE3 64 aaKnown RBP14.57□□□□□ -0.08
SDC1-205ENST00000447124 TMEM14CQ9P0S9 112 aa14.57□□□□□ -0.08
SDC1-205ENST00000447124 TIMM8BQ9Y5J9 83 aaPredicted RBP14.57□□□□□ -0.08
SDC1-205ENST00000447124 NPIPB6E9PJ23 425 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 M0R3E3 92 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 ZNF253O75346 499 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 PYYP10082 97 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 ZNF493Q6ZR52 646 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 NPCDR1Q9BY65 106 aa14.56□□□□□ -0.08
SDC1-205ENST00000447124 INMT-MINDY4F8WBC2 141 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 J3KRW8 73 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 MPDU1O75352 247 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 HIST1H1EP10412 219 aaKnown RBP14.55□□□□□ -0.08
SDC1-205ENST00000447124 ERCC8Q13216 396 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 C15orf53Q8NAA6 179 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 OR5C1Q8NGR4 320 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 THAP6Q8TBB0 222 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 TMEM263Q8WUH6 116 aaKnown RBP14.55□□□□□ -0.08
SDC1-205ENST00000447124 NMES1Q9C002 83 aa14.55□□□□□ -0.08
SDC1-205ENST00000447124 ATP5G1P05496 136 aa14.54□□□□□ -0.08
SDC1-205ENST00000447124 ATP5G3P48201 142 aa14.54□□□□□ -0.08
SDC1-205ENST00000447124 FAM167A-AS1Q96KT0 104 aa14.54□□□□□ -0.08
SDC1-205ENST00000447124 ODF3Q96PU9 254 aa14.54□□□□□ -0.08
SDC1-205ENST00000447124 PRSS29PA6NIE9 313 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 E5RGE8 158 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 RLN2P04090 185 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 LRRC37A5PQ49AS3 106 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 MIR17HGQ75NE6 70 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 LINC00612Q8N6U2 182 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 MRPL53Q96EL3 112 aaKnown RBP14.53□□□□□ -0.08
SDC1-205ENST00000447124 SLC25A2Q9BXI2 301 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 SLC25A31Q9H0C2 315 aa14.53□□□□□ -0.08
SDC1-205ENST00000447124 TRAV12-3A0A0B4J271 114 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 PRAF2O60831 178 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 LEPP41159 167 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 H2BFSP57053 126 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 CLINT1Q14677 625 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 EXOC3-AS1Q8N2X6 119 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 BLNKQ8WV28 456 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 MARVELD1Q9BSK0 173 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 AGPAT4-IT1Q9H0P7 198 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 PTTG2Q9NZH5 202 aa14.52□□□□□ -0.09
SDC1-205ENST00000447124 NUDT3O95989 172 aa14.51□□□□□ -0.09
SDC1-205ENST00000447124 CCDC28AQ8IWP9 274 aa14.51□□□□□ -0.09
SDC1-205ENST00000447124 FAM19A4Q96LR4 140 aa14.51□□□□□ -0.09
SDC1-205ENST00000447124 TIMM9Q9Y5J7 89 aa14.51□□□□□ -0.09
SDC1-205ENST00000447124 RNF141Q8WVD5 230 aa14.5□□□□□ -0.09
SDC1-205ENST00000447124 KRTAP17-1Q9BYP8 105 aa14.5□□□□□ -0.09
SDC1-205ENST00000447124 WDR61Q9GZS3 305 aaKnown RBP14.5□□□□□ -0.09
SDC1-205ENST00000447124 PRELID1Q9Y255 219 aa14.5□□□□□ -0.09
SDC1-205ENST00000447124 CYCSP99999 105 aaKnown RBP14.49□□□□□ -0.09
SDC1-205ENST00000447124 CD300CQ08708 224 aa14.49□□□□□ -0.09
SDC1-205ENST00000447124 PDE6HQ13956 83 aa14.49□□□□□ -0.09
SDC1-205ENST00000447124 LINC00477Q96M19 166 aa14.49□□□□□ -0.09
SDC1-205ENST00000447124 KLLNB2CW77 178 aa14.48□□□□□ -0.09
SDC1-205ENST00000447124 ZNF324O75467 553 aaPredicted RBP14.48□□□□□ -0.09
SDC1-205ENST00000447124 NBEAP1P0C6P0 100 aa14.48□□□□□ -0.09
SDC1-205ENST00000447124 FAM3BP58499 235 aaPredicted RBP14.48□□□□□ -0.09
SDC1-205ENST00000447124 ICAM4Q14773 271 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms