RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 BCL6BQ8N143 479 aaPredicted RBP12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 FANCD2OSQ96PS1 177 aa12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 SERTM2A0A1B0GWG4 89 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 CT45A10P0DMU9 189 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 PRB4P10163 310 aaPredicted RBP12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 CEACAM3P40198 252 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 C5orf64Q2M2E5 130 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 FBLN7Q53RD9 439 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 AAMDCQ9H7C9 122 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 S4R3C0 116 aa12.83□□□□□ -0.35
CLCNKA-203ENST00000439316 KMT2BQ9UMN6 2715 aaPredicted RBP12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 F8W735 103 aaPredicted RBP12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 LY6HO94772 140 aa12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 MFAP4P55083 255 aa12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 ARF6P62330 175 aa12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 MPV17L2Q567V2 206 aa12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 ZNF747Q9BV97 191 aa12.83□□□□□ -0.36
CLCNKA-203ENST00000439316 ASH1LQ9NR48 2969 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 KLRD1Q13241 179 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 FA2HQ7L5A8 372 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 COX8CQ7Z4L0 72 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 DTX2Q86UW9 622 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 IGFBPL1Q8WX77 278 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 MCRIP2Q9BUT9 160 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 UBTD1Q9HAC8 227 aa12.82□□□□□ -0.36
CLCNKA-203ENST00000439316 M0R1W7 72 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 BVES-AS1Q5T3Y7 98 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 OR10AG1Q8NH19 301 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 TPPP3Q9BW30 176 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 U3KQK5 164 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 SPG11Q96JI7 2443 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 CSN1S1P47710 185 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 PSG9Q00887 426 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 ARL6IP6Q8N6S5 226 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 PRSS3P2Q8NHM4 247 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 ARPC1AQ92747 370 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 CBY1Q9Y3M2 126 aa12.81□□□□□ -0.36
CLCNKA-203ENST00000439316 TMEM189A5PLL7 270 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 H0Y8G0 127 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 SH2D1AO60880 128 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 NDPQ00604 133 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 LYZL1Q6UWQ5 148 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 TTC9CQ8N5M4 171 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 CENPEQ02224 2701 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 A0A096LNJ9 63 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 IGHV2-70DA0A0C4DH43 119 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 NUDT3O95989 172 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 PRTN3P24158 256 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 HES1Q14469 280 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 ZNF562Q6V9R5 426 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 C21orf62Q9NYP8 219 aa12.8□□□□□ -0.36
CLCNKA-203ENST00000439316 D6R8Y8 96 aa12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 FAM104BQ5XKR9 115 aa12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 C12orf54Q6X4T0 127 aa12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 TIMD4Q96H15 378 aa12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 PMCHL2Q9BQD1 86 aa12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 TIMM8BQ9Y5J9 83 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-203ENST00000439316 TMEM213A2RRL7 107 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 TAX1BP3O14907 124 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 NCR2O95944 276 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 RPL7P18124 248 aaKnown RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 IFI27P40305 119 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 Q8N6K4 173 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 LOC105371242A0A075B767 164 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 IGKV2-40A0A087WW87 121 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 FBLL1A6NHQ2 334 aaKnown RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 IGKV2D-40P01614 121 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 FAM106CPP0CH98 169 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 COX8AP10176 69 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 HIST1H1AQ02539 215 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 FAM106AQ4KMX7 169 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 SAPCD1Q5SSQ6 148 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 DEFB125Q8N687 156 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 SIGLEC8Q9NYZ4 499 aa12.78□□□□□ -0.36
CLCNKA-203ENST00000439316 TMSB15BA0A087X1C1 80 aa12.77□□□□□ -0.37
CLCNKA-203ENST00000439316 LOXL1Q08397 574 aaPredicted RBP12.77□□□□□ -0.37
CLCNKA-203ENST00000439316 AMN1Q8IY45 258 aa12.77□□□□□ -0.37
CLCNKA-203ENST00000439316 PRELID3AQ96N28 172 aa12.77□□□□□ -0.37
CLCNKA-203ENST00000439316 PRR25Q96S07 402 aa12.77□□□□□ -0.37
CLCNKA-203ENST00000439316 MUC21A0A0G2JKD1 596 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 MUC21A0A140T8X8 626 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 A0A1W2PRD5 423 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 A0A1W2PRF3 423 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 A0A1W2PRM7 423 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 K7EP13 123 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 SRSF1Q07955 248 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 MUC21Q5SSG8 566 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 ORMDL3Q8N138 153 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 NDUFS7O75251 213 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 CCDC144NLQ6NUI1 221 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 DYNAPQ8N1N2 210 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 DPF1Q92782 380 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 THYN1Q9P016 225 aa12.76□□□□□ -0.37
CLCNKA-203ENST00000439316 MED13LQ71F56 2210 aa12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 OOSP1A8MZH6 123 aa12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 RPS20P60866 119 aaKnown RBP12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 RHOGP84095 191 aa12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 MRPL51Q4U2R6 128 aaKnown RBP12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 C2orf91Q6ZV80 131 aa12.75□□□□□ -0.37
CLCNKA-203ENST00000439316 PIP4P2Q8N4L2 257 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms