RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DENND4CQ5VZ89 1909 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 CFHR1Q03591 330 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 C2orf66Q6UXQ4 117 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 LINC01587Q99440 93 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 SMIM2Q9BVW6 85 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 TOMM7Q9P0U1 55 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 FGF6P10767 208 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 FOXL2NBQ6ZUU3 175 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 LINC00643Q86TS7 51 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 GATD1Q8NB37 220 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 LMO1P25800 156 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 UBE2BP63146 152 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 LINC00311Q8N616 119 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 TLN2Q9Y4G6 2542 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 TRAV12-3A0A0B4J271 114 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 TEX48A0A1B0GUV7 120 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 H3BUA1 57 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 RPL39P5Q59GN2 51 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 C15orf53Q8NAA6 179 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 NABP1Q96AH0 204 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 GATA4P43694 442 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 DAZ1Q9NQZ3 744 aaKnown RBP5.88□□□□□ -1.47
VPS53-204ENST00000437048 CENPVL1A0A0U1RR11 272 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 IGLC7A0M8Q6 106 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 RNASE4P34096 147 aaKnown RBP5.88□□□□□ -1.47
VPS53-204ENST00000437048 PAX9P55771 341 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 GTSCR1Q86UQ5 136 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 C1orf43Q9BWL3 253 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 LYZL1Q6UWQ5 148 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 K7EM74 188 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 HRKO00198 91 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 IMMP1LQ96LU5 166 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 NLRC5Q86WI3 1866 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 C20orf204Q6ZNR8 217 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 ZNF329Q86UD4 541 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 SRSF3P84103 164 aaKnown RBP5.87□□□□□ -1.47
VPS53-204ENST00000437048 PPP1R32Q7Z5V6 425 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 DCTN5Q9BTE1 182 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 CRIM1Q9NZV1 1036 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 CFC1BP0CG36 223 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 CFC1P0CG37 223 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 PSG7Q13046 419 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 ORMDL1Q9P0S3 153 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 TRAV8-3A0A0A6YYJ7 113 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 ETV2O00321 342 aaPredicted RBP5.87□□□□□ -1.47
VPS53-204ENST00000437048 C20orf173Q96LM9 149 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 SNAI2O43623 268 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 C2CD3Q4AC94 2353 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 V9GYV3 84 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 ADCYAP1P18509 176 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 CFHR2P36980 270 aa5.87□□□□□ -1.47
VPS53-204ENST00000437048 KIAA1549Q9HCM3 1950 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 TRBV6-1A0A0K0K1D8 114 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGHV3OR15-7A0A075B7D8 119 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1D-33P01593 117 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1-33P01594 117 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGHG3P01860 377 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 LTBRP36941 435 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 VWC2Q2TAL6 325 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 STHQ8IWL8 128 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 CHCHD5Q9BSY4 110 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 ARRDC1-AS1Q9H2J1 176 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 C10orf105Q8TEF2 133 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 CECR9P0C854 216 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 MST1P26927 711 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 A6NNC1 897 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 MRPL55Q7Z7F7 128 aaKnown RBP5.86□□□□□ -1.47
VPS53-204ENST00000437048 TRGV4A0A0C4DH28 118 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1-9A0A0C4DH69 117 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1D-13A0A0B4J2D9 117 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1-13P0DP09 117 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 Q6ZWC4 215 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 FZR1Q9UM11 496 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 MED14OSP0DP75 135 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 C5orf64Q2M2E5 130 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 C1QL2Q7Z5L3 287 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 ZNRF1Q8ND25 227 aa5.86□□□□□ -1.47
VPS53-204ENST00000437048 FAM90A27PA6NNH2 459 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 TMEM219Q86XT9 240 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 NUP210Q8TEM1 1887 aaPredicted RBP5.85□□□□□ -1.47
VPS53-204ENST00000437048 A0A0J9YXY3 114 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 J3QQQ9 107 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 IGKV1-5P01602 117 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 ADAMTS9Q9P2N4 1935 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 CCL25O15444 150 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.85□□□□□ -1.47
VPS53-204ENST00000437048 SH2D1AO60880 128 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 Q8NFD4 153 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 MUC7Q8TAX7 377 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 ACANP16112 2415 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 NPSP0C0P6 89 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 TFF2Q03403 129 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 C2orf16Q68DN1 1984 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 A0A0A6YYD4 124 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 CDKN1AP38936 164 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 INS-IGF2F8WCM5 200 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 ZNF876PQ49A33 203 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 IGLL1P15814 213 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 DEFB104AQ8WTQ1 72 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 C15orf62A8K5M9 175 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms