RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SPOCK3Q9BQ16 436 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 CLDN16Q9Y5I7 305 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 IGKV1-12A0A0C4DH73 117 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 IGKV1D-12P01611 117 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 TIMM21Q9BVV7 248 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 NAV2Q8IVL1 2488 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 LGALS1P09382 135 aaKnown RBP9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 BTCP35070 178 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 LINC00587B1AMM8 73 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 SRSF4Q08170 494 aaKnown RBP9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 VSIRQ9H7M9 311 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 RNF222A6NCQ9 220 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 OVOL3O00110 214 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 DMRTC2Q8IXT2 367 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 RNF5Q99942 180 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 ZMAT4Q9H898 229 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 TRAV9-2A0A087WT02 112 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 VCYO14598 125 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 TMEM155Q4W5P6 130 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 XCL2Q9UBD3 114 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 C5orf30Q96GV9 206 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 TMEM170AQ8WVE7 144 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 MRAPQ8TCY5 172 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 RPL32P62910 135 aaKnown RBP9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 SAMD5Q5TGI4 173 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 NUP35Q8NFH5 326 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 RASL10AQ92737 203 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 LYPD3O95274 346 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 CRIPAKQ8N1N5 446 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 OVOL2Q9BRP0 275 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 FBLN5Q9UBX5 448 aa9.79□□□□□ -0.84
CCDC88A-207ENST00000436346 IGHV2-70DA0A0C4DH43 119 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 CHD8Q9HCK8 2581 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 IGHV3-16A0A0C4DH30 117 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BKO60814 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BJP06899 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BOP23527 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BBP33778 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BDP58876 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BCP62807 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 SEC11AP67812 179 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 SSBP2P81877 361 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST2H2BEQ16778 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HAPLN4Q86UW8 402 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BHQ93079 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 GFI1Q99684 422 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BNQ99877 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H2BMQ99879 126 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 ATP6V0E1O15342 81 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 EFNA2O43921 213 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 HIST1H4AP62805 103 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 KLK9Q9UKQ9 250 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 ERG28Q9UKR5 140 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 J3QKU1 62 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 Q6ZS92 163 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 AGMATQ9BSE5 352 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 KLF12Q9Y4X4 402 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 C1orf122Q6ZSJ8 110 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 SPINK13Q1W4C9 94 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 Q6P435 159 aa9.78□□□□□ -0.84
CCDC88A-207ENST00000436346 ACANP16112 2415 aa9.77□□□□□ -0.84
CCDC88A-207ENST00000436346 SMKR1H3BMG3 65 aa9.77□□□□□ -0.84
CCDC88A-207ENST00000436346 LY6G6FQ5SQ64 297 aa9.77□□□□□ -0.85
CCDC88A-207ENST00000436346 PLEKHB2Q96CS7 222 aa9.77□□□□□ -0.85
CCDC88A-207ENST00000436346 LINC01559Q495D7 138 aa9.77□□□□□ -0.85
CCDC88A-207ENST00000436346 SPXQ9BT56 116 aa9.77□□□□□ -0.85
CCDC88A-207ENST00000436346 GLRX5Q86SX6 157 aa9.77□□□□□ -0.85
CCDC88A-207ENST00000436346 MEGF9Q9H1U4 602 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 IGHV1-69DA0A0B4J2H0 117 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 IGHV1-69P01742 117 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 UBE2E1P51965 193 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 LINC01549A6NIU2 74 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 B3GALT5-AS1P59052 145 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 IFITM2Q01629 132 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF562Q6V9R5 426 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 VWC2LB2RUY7 222 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 DEFB131AP59861 70 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF114Q8NC26 417 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 C8orf49Q96NF6 230 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 ANAPC13Q9BS18 74 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 SMPXQ9UHP9 88 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 AZU1P20160 251 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNRD1Q9P1U0 126 aa9.76□□□□□ -0.85
CCDC88A-207ENST00000436346 EDA2RQ9HAV5 297 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 GSN-AS1Q9NRJ2 163 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 TRBV25-1A0A075B6N4 114 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 MPZP25189 248 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 A8MWV9 139 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 LINC00205P59089 165 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 DLX4Q92988 240 aaPredicted RBP9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 PDE6HQ13956 83 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 RASL11AQ6T310 242 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF48Q96MX3 618 aaPredicted RBP9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 LHBP01229 141 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 GAGE13Q4V321 117 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 LINC00518Q8N0U6 118 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 SRSF8Q9BRL6 282 aaKnown RBP9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 MYMXA0A1B0GTQ4 84 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms