RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NPIPB11E5RHQ5 1161 aa7.87□□□□□ -1.15
USP54-205ENST00000424265 Q6Q795 121 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 HRCT1Q6UXD1 115 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 GAFA1Q96PS6 74 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 C21orf62Q9NYP8 219 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 EXPH5Q8NEV8 1989 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 TCRBV4S1A1TA0A5B7 111 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 PLAUP00749 431 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 IGLC6P0CF74 106 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 RIGQ13278 110 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 LGALS9BQ3B8N2 356 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 LGALS9CQ6DKI2 356 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 PDPNQ86YL7 162 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 TMEM133Q9H2Q1 129 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 AAMDCQ9H7C9 122 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 MINOS1Q5TGZ0 78 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 MINOS1-NBL1R4GNA1 71 aa7.86□□□□□ -1.15
USP54-205ENST00000424265 PHF3Q92576 2039 aaKnown RBP7.86□□□□□ -1.15
USP54-205ENST00000424265 TRAV4A0A0B4J268 109 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 PRB1P04280 392 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 TEPPQ6URK8 271 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 NABP2Q9BQ15 211 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 DCTN5Q9BTE1 182 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 SLC25A2Q9BXI2 301 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 TRBV20OR9-2A0A075B6H5 130 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 MYOD1P15172 320 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 KLF17Q5JT82 389 aaPredicted RBP7.85□□□□□ -1.15
USP54-205ENST00000424265 FAM201AQ5SY85 155 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 RNF144BQ7Z419 303 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 CPAMD8Q8IZJ3 1885 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 J3QLI3 93 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 FSTL3O95633 263 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 ODF3L1Q8IXM7 274 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 RPUSD1Q9UJJ7 312 aaKnown RBP7.85□□□□□ -1.15
USP54-205ENST00000424265 HERVK_113P61574 105 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 TAL2Q16559 108 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 HIGD1BQ9P298 99 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 MORN3Q6PF18 240 aaPredicted RBP7.85□□□□□ -1.15
USP54-205ENST00000424265 CD177Q8N6Q3 437 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 GATD1Q8NB37 220 aa7.85□□□□□ -1.15
USP54-205ENST00000424265 MRPL32Q9BYC8 188 aaKnown RBP7.85□□□□□ -1.15
USP54-205ENST00000424265 IGKV1D-17A0A075B6S4 117 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 WISP2O76076 250 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 ZCCHC24Q8N2G6 241 aaKnown RBP7.84□□□□□ -1.15
USP54-205ENST00000424265 C3orf22Q8N5N4 141 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 ANKRD29Q8N6D5 301 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 DIDO1Q9BTC0 2240 aaKnown RBP7.84□□□□□ -1.15
USP54-205ENST00000424265 NCOR2Q9Y618 2525 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 KIR2DL5BQ8NHK3 375 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 CENPFP49454 3210 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 TINCRA0A1B0GVN0 87 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 LINC01356Q8N9X3 169 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 IFI27L1Q96BM0 104 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 RNF5Q99942 180 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 ZNF747Q9BV97 191 aa7.84□□□□□ -1.15
USP54-205ENST00000424265 NHLRC4P0CG21 123 aaPredicted RBP7.84□□□□□ -1.16
USP54-205ENST00000424265 DRAM1Q8N682 238 aa7.84□□□□□ -1.16
USP54-205ENST00000424265 K7EMI3 77 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 COL8A2P25067 703 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 C1orf147Q96MC9 270 aaPredicted RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 C7orf69Q9H7B7 122 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 HBDP02042 147 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 GRNP28799 593 aaKnown RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 UBE2L3P68036 154 aaKnown RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 TMEM14EPQ6UXP3 125 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 NXT2Q9NPJ8 142 aaKnown RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 HEATR1Q9H583 2144 aaKnown RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 UQCRQO14949 82 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 RS1O15537 224 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 DUSP14O95147 198 aaKnown RBP7.83□□□□□ -1.16
USP54-205ENST00000424265 IGKCP01834 107 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 GTSCR1Q86UQ5 136 aa7.83□□□□□ -1.16
USP54-205ENST00000424265 FAM236AA0A1B0GUQ0 79 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 FAM236BA0A1B0GV22 79 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 A0A1B0GX51 115 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 TNFRSF13BO14836 293 aaPredicted RBP7.82□□□□□ -1.16
USP54-205ENST00000424265 CFAP126Q5VTH2 177 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 A0A0G2JRQ6 117 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 FAM90A9PA6NNJ1 464 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 EML6Q6ZMW3 1958 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 PSPNO60542 156 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 WDR86Q86TI4 376 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 AMN1Q8IY45 258 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 C18orf15Q96N68 181 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 LYNX1G3V0Z9 82 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 IGHV1-8P0DP01 117 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 LYNX1P0DP58 116 aa7.82□□□□□ -1.16
USP54-205ENST00000424265 RPP21Q9H633 154 aaKnown RBP7.82□□□□□ -1.16
USP54-205ENST00000424265 CD24P25063 80 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 LYPD6Q86Y78 171 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 WFDC3Q8IUB2 231 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 INTS1Q8N201 2190 aaKnown RBP7.81□□□□□ -1.16
USP54-205ENST00000424265 LHBP01229 141 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 RPL27AP46776 148 aaKnown RBP7.81□□□□□ -1.16
USP54-205ENST00000424265 UTF1Q5T230 341 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 C11orf52Q96A22 123 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 BPESC1Q9GZL8 116 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 KIAA1549Q9HCM3 1950 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 POLEQ07864 2286 aa7.81□□□□□ -1.16
USP54-205ENST00000424265 TMEM200BQ69YZ2 307 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms