RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SFT2D1Q8WV19 159 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 RPUSD4Q96CM3 377 aaKnown RBP12.54□□□□□ -0.4
COL7A1-202ENST00000422991 MRPL53Q96EL3 112 aaKnown RBP12.54□□□□□ -0.4
COL7A1-202ENST00000422991 Q9H3A6 140 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 TMPRSS5Q9H3S3 457 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 PRELID1Q9Y255 219 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 HLA-DRB4X5D2U9 266 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 A0A0J9YX75 114 aa12.53□□□□□ -0.4
COL7A1-202ENST00000422991 ZNF705FA8MVS1 300 aaPredicted RBP12.53□□□□□ -0.4
COL7A1-202ENST00000422991 M0R3E3 92 aa12.53□□□□□ -0.4
COL7A1-202ENST00000422991 TRPT1Q86TN4 253 aaKnown RBP12.53□□□□□ -0.4
COL7A1-202ENST00000422991 STHQ8IWL8 128 aa12.53□□□□□ -0.4
COL7A1-202ENST00000422991 LOC102724200A0A096LPH7 203 aaPredicted RBP12.52□□□□□ -0.41
COL7A1-202ENST00000422991 TRAV1-1A0A0B4J248 108 aa12.52□□□□□ -0.41
COL7A1-202ENST00000422991 H3BMM0 161 aa12.52□□□□□ -0.41
COL7A1-202ENST00000422991 EBLN2Q6P2I7 272 aa12.52□□□□□ -0.41
COL7A1-202ENST00000422991 OR8A1Q8NGG7 326 aa12.52□□□□□ -0.41
COL7A1-202ENST00000422991 OTORQ9NRC9 128 aa12.52□□□□□ -0.41
COL7A1-202ENST00000422991 NBEAL2Q6ZNJ1 2754 aa12.51□□□□□ -0.41
COL7A1-202ENST00000422991 A0A1B0GV50 99 aa12.51□□□□□ -0.41
COL7A1-202ENST00000422991 ZNF705EA8MWA4 302 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-202ENST00000422991 PRAC2D3DTV9 90 aa12.51□□□□□ -0.41
COL7A1-202ENST00000422991 PRB4P10163 310 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-202ENST00000422991 RPL35AP18077 110 aaKnown RBP12.51□□□□□ -0.41
COL7A1-202ENST00000422991 COL7A1Q02388 2944 aa12.51□□□□□ -0.41
COL7A1-202ENST00000422991 A8MTW9 85 aa12.5□□□□□ -0.41
COL7A1-202ENST00000422991 ZNF705DP0CH99 300 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-202ENST00000422991 ZNF705BP0CI00 300 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-202ENST00000422991 TEX261Q6UWH6 196 aa12.5□□□□□ -0.41
COL7A1-202ENST00000422991 CLUHP3Q96NS8 147 aa12.5□□□□□ -0.41
COL7A1-202ENST00000422991 YTHDF2Q9Y5A9 579 aaKnown RBP12.5□□□□□ -0.41
COL7A1-202ENST00000422991 A0A1W2PRE2 83 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 PGPA6NDG6 321 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 GGTLC3B5MD39 225 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 DUSP14O95147 198 aaKnown RBP12.49□□□□□ -0.41
COL7A1-202ENST00000422991 HBE1P02100 147 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 CNN1P51911 297 aaKnown RBP12.49□□□□□ -0.41
COL7A1-202ENST00000422991 UBE2G2P60604 165 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 HIST1H1AQ02539 215 aaPredicted RBP12.49□□□□□ -0.41
COL7A1-202ENST00000422991 B9D2Q9BPU9 175 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 ARL2-SNX15V9GYD0 113 aa12.49□□□□□ -0.41
COL7A1-202ENST00000422991 KIR2DL5BA0A0G2JN68 375 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 KIR2DL5BA0A0G2JPC4 375 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 FAM74A7A6NL05 159 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 TEX46H3BTG2 121 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 CSN1S1P47710 185 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 APOC4P55056 127 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 HAGHQ16775 308 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 KIR2DL5AQ8N109 375 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 ZNF680Q8NEM1 530 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 OR4B1Q8NGF8 309 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 OR10J6PQ8NGY7 276 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 KIR2DL5BQ8NHK3 375 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 TENM3Q9P273 2699 aa12.48□□□□□ -0.41
COL7A1-202ENST00000422991 IGKV2-40A0A087WW87 121 aaPredicted RBP12.47□□□□□ -0.41
COL7A1-202ENST00000422991 NPIPB6E9PJ23 425 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 IGKV2D-40P01614 121 aaPredicted RBP12.47□□□□□ -0.41
COL7A1-202ENST00000422991 IGKV3-20P01619 116 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 PPT1P50897 306 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 BLOC1S1P78537 153 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 CCL20P78556 96 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 MORN3Q6PF18 240 aaPredicted RBP12.47□□□□□ -0.41
COL7A1-202ENST00000422991 AMTNQ6UX39 209 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 ARL6IP6Q8N6S5 226 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 C5orf17Q8NAS9 161 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 RXFP4Q8TDU9 374 aa12.47□□□□□ -0.41
COL7A1-202ENST00000422991 DIRC3C9JPN6 131 aa12.46□□□□□ -0.41
COL7A1-202ENST00000422991 IFNA7P01567 189 aa12.46□□□□□ -0.41
COL7A1-202ENST00000422991 SLC25A5P05141 298 aaKnown RBP12.46□□□□□ -0.41
COL7A1-202ENST00000422991 SUMO1P63165 101 aaKnown RBP12.46□□□□□ -0.41
COL7A1-202ENST00000422991 SBSPONQ8IVN8 264 aa12.46□□□□□ -0.41
COL7A1-202ENST00000422991 CMTM2Q8TAZ6 248 aa12.46□□□□□ -0.41
COL7A1-202ENST00000422991 NKX6-2Q9C056 277 aaPredicted RBP12.46□□□□□ -0.41
COL7A1-202ENST00000422991 CSTL1Q9H114 145 aa12.46□□□□□ -0.41
COL7A1-202ENST00000422991 PAGE4O60829 102 aa12.45□□□□□ -0.42
COL7A1-202ENST00000422991 GIG44P09565 113 aaPredicted RBP12.45□□□□□ -0.42
COL7A1-202ENST00000422991 GNG5P63218 68 aa12.45□□□□□ -0.42
COL7A1-202ENST00000422991 ASCL2Q99929 193 aa12.45□□□□□ -0.42
COL7A1-202ENST00000422991 MANBALQ9NQG1 85 aa12.45□□□□□ -0.42
COL7A1-202ENST00000422991 DNAH9Q9NYC9 4486 aa12.45□□□□□ -0.42
COL7A1-202ENST00000422991 RBAKDNA6NC62 111 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 UBE2CO00762 179 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 CA1P00915 261 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-202ENST00000422991 ERCC8Q13216 396 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 C9orf47Q6ZRZ4 202 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 CCDC28AQ8IWP9 274 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 LYPD6BQ8NI32 183 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 VGLL1Q99990 258 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 SLC35B3Q9H1N7 401 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 GNG13Q9P2W3 67 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 RPH3ALQ9UNE2 315 aa12.44□□□□□ -0.42
COL7A1-202ENST00000422991 TCRAP04437 139 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 ATP5G3P48201 142 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 NUTF2P61970 127 aaKnown RBP12.43□□□□□ -0.42
COL7A1-202ENST00000422991 PMS2P11Q13670 270 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 CST9LP1Q5W188 147 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 GOLT1AQ6ZVE7 132 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 ODF3Q96PU9 254 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 TM2D3Q9BRN9 247 aa12.43□□□□□ -0.42
COL7A1-202ENST00000422991 AGPAT4-IT1Q9H0P7 198 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms