RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TTC9CQ8N5M4 171 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 C21orf62Q9NYP8 219 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 TIMM8BQ9Y5J9 83 aaPredicted RBP8.64□□□□□ -1.03
LIMS1-207ENST00000422797 WDFY3Q8IZQ1 3526 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 KIR3DS1Q14943 382 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 C5orf64Q2M2E5 130 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 GFRALQ6UXV0 394 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 ZNF562Q6V9R5 426 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 ADAMTSL5Q6ZMM2 481 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 OR2K2Q8NGT1 345 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 C17orf77Q96MU5 243 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 NAV3Q8IVL0 2385 aa8.64□□□□□ -1.03
LIMS1-207ENST00000422797 A0A0G2JLM5 398 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 FCER1GP30273 86 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 TWIST1Q15672 202 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 CFHR4Q92496 578 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 ARPC1AQ92747 370 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 C8orf49Q96NF6 230 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 TP73-AS1Q9UF72 201 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 GPR179Q6PRD1 2367 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 ZNF292O60281 2723 aa8.63□□□□□ -1.03
LIMS1-207ENST00000422797 NCOR2Q9Y618 2525 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 CADP27708 2225 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 TPRP12270 2363 aaKnown RBP8.62□□□□□ -1.03
LIMS1-207ENST00000422797 LOC389332A0A1B0GUA5 103 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 TMEM213A2RRL7 107 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 FABP5P3A8MUU1 101 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 M0R3E3 92 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 NDUFS7O75251 213 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 FABP2P12104 132 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 SRSF1Q07955 248 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIMS1-207ENST00000422797 PRR31Q5SQ13 230 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 TIMD4Q96H15 378 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 ASCL2Q99929 193 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 ZMAT4Q9H898 229 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 ONECUT1Q9UBC0 465 aa8.62□□□□□ -1.03
LIMS1-207ENST00000422797 A0A1W2PPM0 123 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 ODF3BA8MYP8 253 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 SMIM13P0DJ93 91 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 EVI2AP22794 236 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 KLK9Q2XQG4 91 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 C1orf122Q6ZSJ8 110 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 MRPL53Q96EL3 112 aaKnown RBP8.61□□□□□ -1.03
LIMS1-207ENST00000422797 FANCD2OSQ96PS1 177 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 SLC50A1Q9BRV3 221 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 MCRIP2Q9BUT9 160 aaKnown RBP8.61□□□□□ -1.03
LIMS1-207ENST00000422797 CSTL1Q9H114 145 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 HIF1ANQ9NWT6 349 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 KLK9Q9UKQ9 250 aa8.61□□□□□ -1.03
LIMS1-207ENST00000422797 PRSS47A8MTI9 375 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 NPYP01303 97 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 EGR2P11161 476 aaPredicted RBP8.6□□□□□ -1.03
LIMS1-207ENST00000422797 PRTN3P24158 256 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 LOXL1Q08397 574 aaPredicted RBP8.6□□□□□ -1.03
LIMS1-207ENST00000422797 TAL2Q16559 108 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 MINOS1Q5TGZ0 78 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 VKORC1Q9BQB6 163 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 MINOS1-NBL1R4GNA1 71 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 PLCE1Q9P212 2302 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 ACACBO00763 2458 aa8.6□□□□□ -1.03
LIMS1-207ENST00000422797 TMSB15BA0A087X1C1 80 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 G3V4G9 280 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 H3BUT2 72 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 DPM2O94777 84 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 UQCRFS1P47985 274 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 EBI3Q14213 229 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 NEGR1Q7Z3B1 354 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 ERASQ7Z444 233 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 Q8N8P6 123 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 IGKV2-40A0A087WW87 121 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-207ENST00000422797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-207ENST00000422797 KLK10O43240 276 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 IGKV2D-40P01614 121 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-207ENST00000422797 IGKCP01834 107 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 FAM106CPP0CH98 169 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 NMUP48645 174 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 ODF1Q14990 250 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 FBXL19-AS1Q494R0 122 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 FAM106AQ4KMX7 169 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 Q71RC1 249 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-207ENST00000422797 RNF185Q96GF1 192 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 ABHD17AQ96GS6 310 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 MEGF9Q9H1U4 602 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 SPCS1Q9Y6A9 102 aa8.59□□□□□ -1.03
LIMS1-207ENST00000422797 BAHCC1Q9P281 2608 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 EP300Q09472 2414 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-207ENST00000422797 F8W735 103 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-207ENST00000422797 ZNF207O43670 478 aaKnown RBP8.58□□□□□ -1.04
LIMS1-207ENST00000422797 TNFRSF6BO95407 300 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 ORM1P02763 201 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 LEPP41159 167 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 HES1Q14469 280 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 ZNF672Q499Z4 452 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-207ENST00000422797 Q8N6K4 173 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 JMJD8Q96S16 334 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 ATP6V0BQ99437 205 aa8.58□□□□□ -1.04
LIMS1-207ENST00000422797 URB1O60287 2271 aaKnown RBP8.57□□□□□ -1.04
LIMS1-207ENST00000422797 LINC01619G3V211 115 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 K7EMI3 77 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 SNAI2O43623 268 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms